Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1290 ATGGCCGATTCTTCTACTGTGGTGGAAGCTATAGATGGAACTCTCTCTGTAGCATCTGCATTTGGATGTCATCAAGAAGCTGTACAAAATAGAGACCACAAGTTCTTGACGCAAGCAGTTGAAGAGGCTTACAAAGGAGTTGAGTGTGGACATGGAGGTCCATTTGGAGCGGTTGTCGTTCGTAATGATGAAGTAGTTGTGAGCTGTCACAACATGGTCTTGAAAAACACTGACCCTACCGCACATGCTGAAGTCACTGCAGTTAGGGAGGCCTGCAAAAAGCTTGGTCAAATCGAACTTTCGGACTGTGAAATCTATGCATCTTGTGAGCCCTGCCCAATGTGCTTTGGCGCCATCCATCTTTCGAGAATTAAGAGATTGGTTTATGGAGCCAAAGCAGAAGCTGCAATTGCAATAGGTTTTGATGATTTCATTGCTGATGCTTTAAGAGGGACTGGATTTTATCAGAAGGCTAATTTGGAAATCAAGAAAGCAGATGGGATTGGTGCTCTTATTGCTGAGCAAGTGTTTGAGAGAACAAAGGCAAAATTTCAATTGTATTGA 564 43.26 MADSSTVVEAIDGTLSVASAFGCHQEAVQNRDHKFLTQAVEEAYKGVECGHGGPFGAVVVRNDEVVVSCHNMVLKNTDPTAHAEVTAVREACKKLGQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANLEIKKADGIGALIAEQVFERTKAKFQLY 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26667350 26670358 - Sed0017104.1 Sed08g1290 723066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1290 187 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 30 144 IPR002125 -
Sed08g1290 187 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 130 IPR002125 -
Sed08g1290 187 CDD nucleoside_deaminase 36 143 - -
Sed08g1290 187 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 82 119 IPR016192 GO:0008270(InterPro)|GO:0016787(InterPro)
Sed08g1290 187 Gene3D Cytidine Deaminase, domain 2 30 184 - -
Sed08g1290 187 FunFam tRNA-specific adenosine deaminase 30 186 - -
Sed08g1290 187 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 28 142 - GO:0006152(PANTHER)|GO:0047974(PANTHER)
Sed08g1290 187 SUPERFAMILY Cytidine deaminase-like 25 145 IPR016193 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0652 Sed-Chr6:6197171 Sed08g1290 Sed-Chr8:26667350 3.80E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006016 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39