Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1297 ATGGAAGAAACCGATTCATCCTCTCATCTTCATCTTCTTCGACTTCCAGATTTCTCTCACTATGTTGAAATCGATCCCACTGGCCGATATGGAAGATACAATGAAATCCTCGGCAAAGGTGCTTCCAAGACAGTTTACAGGGCGTTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTGAAAACATTGAAGCATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCGCATCGGAACATTAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAATTTAGGCTTAAGCATAGGAGAGTTAACATTAGAGCCGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAAAACCCCCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGATCTTGGTCTCGCTGCTATCCTTCGGAAATCGCACGCTGATCATTGCGTCGGGACACCTGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCTTATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGAAAAAAACCAGAATCCTTGTATAAAGTGAAGGATCTGAGCATGCGGCAATTTGTTGAGAAATGTTTGGCACCGGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGACTGTGAAAGCAAGTCGAAGCTTACAGAATTTCGGGGAGAACTTGAAGGTATTGCTTCTACTGCAGCACACCCTTTCCTTGAACGAGAAAGAAGCTTCAGATCAATAACTTACAGTTTGGAGGCCTCAGACGAATGGAGGTGTCGTACAGTTCAGACTGAACCCGATGGAATCGAACTATTTGAGAACGATGAGGATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGGGAAGATGGCAGCATTGTTATAAGACTTAGGATTGCAGATAAAGAAGGTCAGATTCGAAACATATATTTCCCGTTTGACACAGAGAATGATACAGCATTTACCGTTGCCACCGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGACCAAAATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTTCCTGAGTGGAAGCCAGGGCCTGGCATAGATGAAACTCCTCGCATCTCTTATGATGGTGGCTGCCAAAGCTACGACTCTTCTAACCAACCATTCGATGATAGTTCGAAAGGAAATGAGCAAAATGTAGCAAAACTCTATCAGATTTTAAACTTAAGCACAGTTGAAAGGGCTTCAGTGCACAGACATTTCGACCAGGACTTCCTTAAACCAGATCATCCTCCGCAGCTTGTTGTAGAGAACCCCCCAAAAGTTTCAAGCCAACATTATCAGCCAAACTCCATCCTCCATGAAAACCAGGCTCGTAGTTCTCGAAGTTTTAGGCAAAGCCAATTTGATCACAATTACAAGAAAACAGGTCAGTCAATCACTGTTGAGGATAAAAAAGACAAAGTAATAGATAGCAGAGCCAACGTCATTGCAAGAACTTCACTCAGACGCTGGACGGGTTCCCGATCGCTGTCTACGGTTCGGTCCTATTGTGAAGATAAATTTGCATCTCAAATCCATTGGGAAATTAGATGGCTTTGGAATTGA 1845 41.41 MEETDSSSHLHLLRLPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTAHRNINFVTEMFTSGTLRQFRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPESLYKVKDLSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKSKLTEFRGELEGIASTAAHPFLERERSFRSITYSLEASDEWRCRTVQTEPDGIELFENDEDDQLENLDNSIKGKIREDGSIVIRLRIADKEGQIRNIYFPFDTENDTAFTVATEMIAELDITDQDVTKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGGCQSYDSSNQPFDDSSKGNEQNVAKLYQILNLSTVERASVHRHFDQDFLKPDHPPQLVVENPPKVSSQHYQPNSILHENQARSSRSFRQSQFDHNYKKTGQSITVEDKKDKVIDSRANVIARTSLRRWTGSRSLSTVRSYCEDKFASQIHWEIRWLWN 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26904542 26907672 - Sed0016060.1 Sed08g1297 723073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1297 614 FunFam probable serine/threonine-protein kinase WNK9 114 293 - -
Sed08g1297 614 Gene3D - 375 441 - -
Sed08g1297 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 558 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed08g1297 614 Gene3D Transferase(Phosphotransferase) domain 1 114 294 - -
Sed08g1297 614 CDD STKc_WNK 29 288 - -
Sed08g1297 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1297 614 FunFam Probable serine/threonine-protein kinase WNK1 16 112 - -
Sed08g1297 614 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1297 614 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 433 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed08g1297 614 ProSiteProfiles Protein kinase domain profile. 31 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1297 614 Gene3D Phosphorylase Kinase; domain 1 17 112 - -
Sed08g1297 614 SUPERFAMILY Protein kinase-like (PK-like) 34 289 IPR011009 -
Sed08g1297 614 SMART serkin_6 31 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1297 Sed-Chr8:26904542 Sed11g0251 Sed-Chr11:2244660 6.40E-203 dispersed
Sed08g1297 Sed-Chr8:26904542 Sed08g1298 Sed-Chr8:26904542 1.50E-289 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79626 PF00069 Pkinase 9.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1297 K08867 - csv:101222641 971.459