Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1298 | ATGCTACTAATTCTCTCACATTTCTGCTCAATTTCTGGTTGGTTCTGTTCTGCCAGATTTAGGCTTAAGCATAGGAGAGTTAACATTAGAGCCGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAAAACCCCCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGATCTTGGTCTCGCTGCTATCCTTCGGAAATCGCACGCTGATCATTGCGTCGGGACACCTGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCTTATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGAAAAAAACCAGAATCCTTGTATAAAGTGAAGGATCTGAGCATGCGGCAATTTGTTGAGAAATGTTTGGCACCGGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGACTGTGAAAGCAAGTCGAAGCTTACAGAATTTCGGGGAGAACTTGAAGGTATTGCTTCTACTGCAGCACACCCTTTCCTTGAACGAGAAAGAAGCTTCAGATCAATAACTTACAGTTTGGAGGCCTCAGACGAATGGAGGTGTCGTACAGTTCAGACTGAACCCGATGGAATCGAACTATTTGAGAACGATGAGGATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGGGAAGATGGCAGCATTGTTATAAGACTTAGGATTGCAGATAAAGAAGGTCAGATTCGAAACATATATTTCCCGTTTGACACAGAGAATGATACAGCATTTACCGTTGCCACCGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGACCAAAATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTTCCTGAGTGGAAGCCAGGGCCTGGCATAGATGAAACTCCTCGCATCTCTTATGATGGTGGCTGCCAAAGCTACGACTCTTCTAACCAACCATTCGATGATAGTTCGAAAGGAAATGAGCAAAATGTAGCAAAACTCTATCAGATTTTAAACTTAAGCACAGTTGAAAGGGCTTCAGTGCACAGACATTTCGACCAGGACTTCCTTAAACCAGATCATCCTCCGCAGCTTGTTGTAGAGAACCCCCCAAAAGTTTCAAGCCAACATTATCAGCCAAACTCCATCCTCCATGAAAACCAGGCTCGTAGTTCTCGAAGTTTTAGGCAAAGCCAATTTGATCACAATTACAAGAAAACAGGTCAGTCAATCACTGTTGAGGATAAAAAAGACAAAGTAATAGATAGCAGAGCCAACGTCATTGCAAGAACTTCACTCAGACGCTGGACGGGTTCCCGATCGCTGTCTACGGTTCGGTCCTATTGTGAAGATAAATTTGCATCTCAAATCCATTGGGAAATTAGATGGCTTTGGAATTGA | 1539 | 41.46 | MLLILSHFCSISGWFCSARFRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPESLYKVKDLSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKSKLTEFRGELEGIASTAAHPFLERERSFRSITYSLEASDEWRCRTVQTEPDGIELFENDEDDQLENLDNSIKGKIREDGSIVIRLRIADKEGQIRNIYFPFDTENDTAFTVATEMIAELDITDQDVTKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGGCQSYDSSNQPFDDSSKGNEQNVAKLYQILNLSTVERASVHRHFDQDFLKPDHPPQLVVENPPKVSSQHYQPNSILHENQARSSRSFRQSQFDHNYKKTGQSITVEDKKDKVIDSRANVIARTSLRRWTGSRSLSTVRSYCEDKFASQIHWEIRWLWN | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26904542 | 26907672 | - | Sed0016060.2 | Sed08g1298 | 723074 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1298 | 512 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 53 | 65 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g1298 | 512 | Pfam | Protein kinase domain | 23 | 186 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g1298 | 512 | SMART | serkin_6 | 2 | 186 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g1298 | 512 | Gene3D | - | 273 | 339 | - | - | |
Sed08g1298 | 512 | FunFam | probable serine/threonine-protein kinase WNK9 | 12 | 191 | - | - | |
Sed08g1298 | 512 | ProSiteProfiles | Protein kinase domain profile. | 1 | 186 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g1298 | 512 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 20 | 456 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Sed08g1298 | 512 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 277 | 331 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Sed08g1298 | 512 | SUPERFAMILY | Protein kinase-like (PK-like) | 22 | 187 | IPR011009 | - | |
Sed08g1298 | 512 | Gene3D | Transferase(Phosphotransferase) domain 1 | 18 | 192 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1298 | Sed-Chr8:26904542 | Sed11g0251 | Sed-Chr11:2244660 | 5.10E-145 | dispersed | |
Sed08g1297 | Sed-Chr8:26904542 | Sed08g1298 | Sed-Chr8:26904542 | 1.50E-289 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79627 | PF00069 | Pkinase | 1.80E-33 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1298 | K08867 | - | csv:101222641 | 747.658 |