Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1298 ATGCTACTAATTCTCTCACATTTCTGCTCAATTTCTGGTTGGTTCTGTTCTGCCAGATTTAGGCTTAAGCATAGGAGAGTTAACATTAGAGCCGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAAAACCCCCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGATCTTGGTCTCGCTGCTATCCTTCGGAAATCGCACGCTGATCATTGCGTCGGGACACCTGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCTTATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGAAAAAAACCAGAATCCTTGTATAAAGTGAAGGATCTGAGCATGCGGCAATTTGTTGAGAAATGTTTGGCACCGGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGACTGTGAAAGCAAGTCGAAGCTTACAGAATTTCGGGGAGAACTTGAAGGTATTGCTTCTACTGCAGCACACCCTTTCCTTGAACGAGAAAGAAGCTTCAGATCAATAACTTACAGTTTGGAGGCCTCAGACGAATGGAGGTGTCGTACAGTTCAGACTGAACCCGATGGAATCGAACTATTTGAGAACGATGAGGATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGGGAAGATGGCAGCATTGTTATAAGACTTAGGATTGCAGATAAAGAAGGTCAGATTCGAAACATATATTTCCCGTTTGACACAGAGAATGATACAGCATTTACCGTTGCCACCGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGACCAAAATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTTCCTGAGTGGAAGCCAGGGCCTGGCATAGATGAAACTCCTCGCATCTCTTATGATGGTGGCTGCCAAAGCTACGACTCTTCTAACCAACCATTCGATGATAGTTCGAAAGGAAATGAGCAAAATGTAGCAAAACTCTATCAGATTTTAAACTTAAGCACAGTTGAAAGGGCTTCAGTGCACAGACATTTCGACCAGGACTTCCTTAAACCAGATCATCCTCCGCAGCTTGTTGTAGAGAACCCCCCAAAAGTTTCAAGCCAACATTATCAGCCAAACTCCATCCTCCATGAAAACCAGGCTCGTAGTTCTCGAAGTTTTAGGCAAAGCCAATTTGATCACAATTACAAGAAAACAGGTCAGTCAATCACTGTTGAGGATAAAAAAGACAAAGTAATAGATAGCAGAGCCAACGTCATTGCAAGAACTTCACTCAGACGCTGGACGGGTTCCCGATCGCTGTCTACGGTTCGGTCCTATTGTGAAGATAAATTTGCATCTCAAATCCATTGGGAAATTAGATGGCTTTGGAATTGA 1539 41.46 MLLILSHFCSISGWFCSARFRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPESLYKVKDLSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKSKLTEFRGELEGIASTAAHPFLERERSFRSITYSLEASDEWRCRTVQTEPDGIELFENDEDDQLENLDNSIKGKIREDGSIVIRLRIADKEGQIRNIYFPFDTENDTAFTVATEMIAELDITDQDVTKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGGCQSYDSSNQPFDDSSKGNEQNVAKLYQILNLSTVERASVHRHFDQDFLKPDHPPQLVVENPPKVSSQHYQPNSILHENQARSSRSFRQSQFDHNYKKTGQSITVEDKKDKVIDSRANVIARTSLRRWTGSRSLSTVRSYCEDKFASQIHWEIRWLWN 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26904542 26907672 - Sed0016060.2 Sed08g1298 723074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1298 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1298 512 Pfam Protein kinase domain 23 186 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1298 512 SMART serkin_6 2 186 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1298 512 Gene3D - 273 339 - -
Sed08g1298 512 FunFam probable serine/threonine-protein kinase WNK9 12 191 - -
Sed08g1298 512 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1298 512 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 456 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed08g1298 512 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 277 331 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed08g1298 512 SUPERFAMILY Protein kinase-like (PK-like) 22 187 IPR011009 -
Sed08g1298 512 Gene3D Transferase(Phosphotransferase) domain 1 18 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1298 Sed-Chr8:26904542 Sed11g0251 Sed-Chr11:2244660 5.10E-145 dispersed
Sed08g1297 Sed-Chr8:26904542 Sed08g1298 Sed-Chr8:26904542 1.50E-289 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79627 PF00069 Pkinase 1.80E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1298 K08867 - csv:101222641 747.658