Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1333 ATGGCCACAGAAGATCCTAAATCCACGGATTGGAGGGATGGTAACGAAGAATCCTTGATAGCCATCGGAACCGAATACTCCGATTCGCAACAATCTCTCTTCCGCGACCGATTTCTCGAACTCTACTCTCCAGATTTCTCCCAAAAGCTTGTGGCGGAGGTGATTGCCACGTATCTGCTGGTGTTCGTCACGTGCGGGGCGGCGGCAATGAGTGCCTCCGATGAGCGGCAGGTGCCGAAGCTCGCCGCCTCGATGGTCGGCGGCCTGATCGTGACGGTCATGATTTACGCCGTCGGACATATCTCCGGCGCTCATATGAACCCCGCCGTTACTTTCGCTTTTGCCGCCGTTCGCAGATTCCCTTGGAAACAGGTTCCATTGTATGCCGCAGCTCAACTAAGTGGGGCTACATCAGCGGCCTTTACGTTGCGCATATTATTAGACCCAATTAAAGAATTAGGTACTACTACACCTTCGGGACCAGAGTCTAAGGCACTTCTCATGGAGATTATCGTCTCGTTTTGTATGATGTTTGTCACTTCTGCAGTCGCCACCGACACAAAAGCGATTGGAGAGCTTGCAGGTATAGCAGTGGGTTCATCTGTTTGTATCACATCCATCTTTGCGGGGCCTATATCAGGCGGGTCGATGAACCCTGCAAGGTCAATTGGACCTGCAATTGCAAGTTCGCATTATGAAGGGATTTGGGTGTACGTTGTTGGACCAGTTGTAGGGACACTCTTGGGAGCATGGTCATATAATTTCATACGATCAGGTGAAAAAAACGAGCACCAGCTTCCTTTAAATTGA 810 50.49 MATEDPKSTDWRDGNEESLIAIGTEYSDSQQSLFRDRFLELYSPDFSQKLVAEVIATYLLVFVTCGAAAMSASDERQVPKLAASMVGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWKQVPLYAAAQLSGATSAAFTLRILLDPIKELGTTTPSGPESKALLMEIIVSFCMMFVTSAVATDTKAIGELAGIAVGSSVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYVVGPVVGTLLGAWSYNFIRSGEKNEHQLPLN 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27765406 27769912 + Sed0013691.1 Sed08g1333 723109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1333 269 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Sed08g1333 269 Gene3D Glycerol uptake facilitator protein. 16 266 IPR023271 -
Sed08g1333 269 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 Pfam Major intrinsic protein 41 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g1333 269 SUPERFAMILY Aquaporin-like 39 261 IPR023271 -
Sed08g1333 269 PANTHER AQUAPORIN NIP2-1 37 259 IPR034294 -
Sed08g1333 269 CDD MIP 48 256 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0627 Sed-Chr6:5774913 Sed08g1333 Sed-Chr8:27765406 9.50E-116 dispersed
Sed08g1333 Sed-Chr8:27765406 Sed10g0202 Sed-Chr10:1175963 4.00E-56 dispersed
Sed08g1332 Sed-Chr8:27656210 Sed08g1333 Sed-Chr8:27765406 1.80E-94 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1333 K09874 - csv:101205456 390.193