Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1333 | ATGGCCACAGAAGATCCTAAATCCACGGATTGGAGGGATGGTAACGAAGAATCCTTGATAGCCATCGGAACCGAATACTCCGATTCGCAACAATCTCTCTTCCGCGACCGATTTCTCGAACTCTACTCTCCAGATTTCTCCCAAAAGCTTGTGGCGGAGGTGATTGCCACGTATCTGCTGGTGTTCGTCACGTGCGGGGCGGCGGCAATGAGTGCCTCCGATGAGCGGCAGGTGCCGAAGCTCGCCGCCTCGATGGTCGGCGGCCTGATCGTGACGGTCATGATTTACGCCGTCGGACATATCTCCGGCGCTCATATGAACCCCGCCGTTACTTTCGCTTTTGCCGCCGTTCGCAGATTCCCTTGGAAACAGGTTCCATTGTATGCCGCAGCTCAACTAAGTGGGGCTACATCAGCGGCCTTTACGTTGCGCATATTATTAGACCCAATTAAAGAATTAGGTACTACTACACCTTCGGGACCAGAGTCTAAGGCACTTCTCATGGAGATTATCGTCTCGTTTTGTATGATGTTTGTCACTTCTGCAGTCGCCACCGACACAAAAGCGATTGGAGAGCTTGCAGGTATAGCAGTGGGTTCATCTGTTTGTATCACATCCATCTTTGCGGGGCCTATATCAGGCGGGTCGATGAACCCTGCAAGGTCAATTGGACCTGCAATTGCAAGTTCGCATTATGAAGGGATTTGGGTGTACGTTGTTGGACCAGTTGTAGGGACACTCTTGGGAGCATGGTCATATAATTTCATACGATCAGGTGAAAAAAACGAGCACCAGCTTCCTTTAAATTGA | 810 | 50.49 | MATEDPKSTDWRDGNEESLIAIGTEYSDSQQSLFRDRFLELYSPDFSQKLVAEVIATYLLVFVTCGAAAMSASDERQVPKLAASMVGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWKQVPLYAAAQLSGATSAAFTLRILLDPIKELGTTTPSGPESKALLMEIIVSFCMMFVTSAVATDTKAIGELAGIAVGSSVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYVVGPVVGTLLGAWSYNFIRSGEKNEHQLPLN | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27765406 | 27769912 | + | Sed0013691.1 | Sed08g1333 | 723109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1333 | 269 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Sed08g1333 | 269 | Gene3D | Glycerol uptake facilitator protein. | 16 | 266 | IPR023271 | - | |
Sed08g1333 | 269 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | PRINTS | Major intrinsic protein family signature | 48 | 67 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | PRINTS | Major intrinsic protein family signature | 236 | 256 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | PRINTS | Major intrinsic protein family signature | 168 | 186 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | PRINTS | Major intrinsic protein family signature | 199 | 221 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | Pfam | Major intrinsic protein | 41 | 253 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed08g1333 | 269 | SUPERFAMILY | Aquaporin-like | 39 | 261 | IPR023271 | - | |
Sed08g1333 | 269 | PANTHER | AQUAPORIN NIP2-1 | 37 | 259 | IPR034294 | - | |
Sed08g1333 | 269 | CDD | MIP | 48 | 256 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0627 | Sed-Chr6:5774913 | Sed08g1333 | Sed-Chr8:27765406 | 9.50E-116 | dispersed | |
Sed08g1333 | Sed-Chr8:27765406 | Sed10g0202 | Sed-Chr10:1175963 | 4.00E-56 | dispersed | |
Sed08g1332 | Sed-Chr8:27656210 | Sed08g1333 | Sed-Chr8:27765406 | 1.80E-94 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1333 | K09874 | - | csv:101205456 | 390.193 |