Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1334 ATGGCGATGGCTAAGTTGGGCGCTGTGTTGGTGTTGGCTCTCATGGCCTTGTCCATGCTTCATTCCACTGTCATGGCCGCCAATGCACGTCCTGGTCGCAACTGGAACCCATACGGACCAGGGAGCGTCAAGATCTACCAATGCCCAAGACGATGCTCAAGACGGTGCATGAAAACACGGTACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGAAAGTGCCTGTGCGTGCCCCCTGGTTACTACGGGAACAAGGCCGTGTGCCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAATGCCCTTAA 321 54.52 MAMAKLGAVLVLALMALSMLHSTVMAANARPGRNWNPYGPGSVKIYQCPRRCSRRCMKTRYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTQQGGPKCP 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27782007 27783423 - Sed0021074.1 Sed08g1334 723110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1334 106 Pfam Gibberellin regulated protein 47 106 IPR003854 -
Sed08g1334 106 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 14 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1334 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1334 Sed-Chr8:27782007 Sed12g1073 Sed-Chr12:7036681 2.10E-24 dispersed
Sed01g3268 Sed-Chr1:60857945 Sed08g1334 Sed-Chr8:27782007 1.40E-20 transposed
Sed03g0889 Sed-Chr3:5503219 Sed08g1334 Sed-Chr8:27782007 2.60E-26 transposed
Sed04g2067 Sed-Chr4:35040789 Sed08g1334 Sed-Chr8:27782007 4.50E-25 transposed
Sed06g0626 Sed-Chr6:5770438 Sed08g1334 Sed-Chr8:27782007 8.50E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g663 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01011 Cam10g1034 Cec10g1065 Cco10g1029 Clacu10g1051 Cmu10g1836 Cre10g1207 Cone12ag1060 . . . . . . . . . . . . . . . Sed08g1334 . . . . . . . . Bhi11g01169 Tan01g0659 Cmetu04g1335 . . Mch10g0461 . . . . . . . . Lsi03g01039 . . Cme07g02163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001462 4 3 0 5 0 2 2 2 2 0 1 3 3 2 3 2 3 0 3 2 2 2 3 1 1 1 3 6 5 3 69