Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1335 ATGGACTTGACTTCTGCAATATCCACCGCCGCCGCCGCCGTCAATAGTACCGGCCTAGGAGCTGTGAAATCCCCTGAATTCGAAGTTGAAACGCCCATCAAAATTCAACCCACCACCAAATCTCAGCTCTTCTCCAACGGCGTTTTCAAGCGCCACCACCACACGGCGCCGCCGCCGCCACCGGTGGTCTATAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGAGGCCACGCACTGGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCACCACCAATCCCACCTCCCTCAAATGCGCCGCCTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGTCGGAGGACCCTATCTCCACTCCGACAACAACCCATGTCATTGAGTACCAACCCCACCATCGCTACCACCCGCCGCCGCCGCACCGGAGCCCAAGCTCCGCCTCTCCTCCGCCGATCTCCTCCTCGTACTACCCTTCCGCCCCCCACATGCTTCTGGCCCTTTCCGGCGGGGTTCCGGAGAACGCCGGCGGCGGATTCCACCACTCAATTCTGACCCCGAGCCCGAATTCGAGGAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTATGAATTCGCAGAGAAAGTGGGATGGAAGATTCAGAAACAAGACGAGGATTCGATCCAAGAATTCTGCAGCGACGTCGGCGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACAATCTCGGCAAGAAAGACGGCTGCCGGAATCTCAACGGCGACGGAGACGCCGATGAAAAAATAAACGGCGGCAGCGGAGCCGCTCATGGGTCGTCTTCTTCCTCTTGA 858 57.69 MDLTSAISTAAAAVNSTGLGAVKSPEFEVETPIKIQPTTKSQLFSNGVFKRHHHTAPPPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATTTNPTSLKCAACGCHRNFHRRESEDPISTPTTTHVIEYQPHHRYHPPPPHRSPSSASPPPISSSYYPSAPHMLLALSGGVPENAGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKQDEDSIQEFCSDVGVDRGVLKVWMHNNKNNLGKKDGCRNLNGDGDADEKINGGSGAAHGSSSSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27834420 27835967 + Sed0000295.1 Sed08g1335 723111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1335 285 Gene3D - 186 254 - -
Sed08g1335 285 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Sed08g1335 285 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Sed08g1335 285 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Sed08g1335 285 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Sed08g1335 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 251 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed08g1335 285 MobiDBLite consensus disorder prediction 133 156 - -
Sed08g1335 285 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Sed08g1335 285 MobiDBLite consensus disorder prediction 252 285 - -
Sed08g1335 285 SUPERFAMILY Homeodomain-like 187 254 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0209 Sed-Chr3:1309083 Sed08g1335 Sed-Chr8:27834420 1.70E-66 dispersed
Sed06g1529 Sed-Chr6:40060791 Sed08g1335 Sed-Chr8:27834420 1.90E-37 dispersed
Sed08g1335 Sed-Chr8:27834420 Sed14g1123 Sed-Chr14:20699515 2.30E-38 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed08g1335 Sed-Chr8:27834420 1.90E-13 wgd
Sed06g0625 Sed-Chr6:5695001 Sed08g1335 Sed-Chr8:27834420 7.10E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39336 PF04770 ZF-HD_dimer 2.70E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1335 - - - 0.0