Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1335 ATGGACTTGACTTCTGCAATATCCACCGCCGCCGCCGCCGTCAATAGTACCGGCCTAGGAGCTGTGAAATCCCCTGAATTCGAAGTTGAAACGCCCATCAAAATTCAACCCACCACCAAATCTCAGCTCTTCTCCAACGGCGTTTTCAAGCGCCACCACCACACGGCGCCGCCGCCGCCACCGGTGGTCTATAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGAGGCCACGCACTGGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCACCACCAATCCCACCTCCCTCAAATGCGCCGCCTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGTCGGAGGACCCTATCTCCACTCCGACAACAACCCATGTCATTGAGTACCAACCCCACCATCGCTACCACCCGCCGCCGCCGCACCGGAGCCCAAGCTCCGCCTCTCCTCCGCCGATCTCCTCCTCGTACTACCCTTCCGCCCCCCACATGCTTCTGGCCCTTTCCGGCGGGGTTCCGGAGAACGCCGGCGGCGGATTCCACCACTCAATTCTGACCCCGAGCCCGAATTCGAGGAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTATGAATTCGCAGAGAAAGTGGGATGGAAGATTCAGAAACAAGACGAGGATTCGATCCAAGAATTCTGCAGCGACGTCGGCGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACAATCTCGGCAAGAAAGACGGCTGCCGGAATCTCAACGGCGACGGAGACGCCGATGAAAAAATAAACGGCGGCAGCGGAGCCGCTCATGGGTCGTCTTCTTCCTCTTGA 858 57.69 MDLTSAISTAAAAVNSTGLGAVKSPEFEVETPIKIQPTTKSQLFSNGVFKRHHHTAPPPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATTTNPTSLKCAACGCHRNFHRRESEDPISTPTTTHVIEYQPHHRYHPPPPHRSPSSASPPPISSSYYPSAPHMLLALSGGVPENAGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKQDEDSIQEFCSDVGVDRGVLKVWMHNNKNNLGKKDGCRNLNGDGDADEKINGGSGAAHGSSSSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27834420 27835967 + Sed0000295.1 Sed08g1335 723111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1335 285 Gene3D - 186 254 - -
Sed08g1335 285 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Sed08g1335 285 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Sed08g1335 285 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Sed08g1335 285 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Sed08g1335 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 251 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed08g1335 285 MobiDBLite consensus disorder prediction 133 156 - -
Sed08g1335 285 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Sed08g1335 285 MobiDBLite consensus disorder prediction 252 285 - -
Sed08g1335 285 SUPERFAMILY Homeodomain-like 187 254 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1335 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0209 Sed-Chr3:1309083 Sed08g1335 Sed-Chr8:27834420 1.70E-66 dispersed
Sed06g1529 Sed-Chr6:40060791 Sed08g1335 Sed-Chr8:27834420 1.90E-37 dispersed
Sed08g1335 Sed-Chr8:27834420 Sed14g1123 Sed-Chr14:20699515 2.30E-38 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed08g1335 Sed-Chr8:27834420 1.90E-13 wgd
Sed06g0625 Sed-Chr6:5695001 Sed08g1335 Sed-Chr8:27834420 7.10E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39336 PF04770 ZF-HD_dimer 2.70E-29 No_clan Sed TF