Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1351 ATGGAGGCTCCAGCTTTGGTTCTGAGGAACGAGCAGAATCTAAGAACATGTTGGACGCAAGACCAAACTCTCGCCACGAGACGTGTCAAGAGACGGCGAAGAGATCTCGTCACGACCACCGCCGCCACCACCGTCGTTGTCGATCAAGCTAATAAGCAACTGTGTCCAAAGAAACAATCCGATCAAGCTGCAACCACCACCACCAAGCGGAGTTCAAGATTTCGAGGTGTCAGCAGGCATAGATGGACGGGTCGATTCGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACACAAAAGAAGAAGGGCAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAAAGCATATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTTCCAGTACTAGAATATGGCAAGGAGATTGAGATCATGCAAACAATGACAAAGGAGGAGTATTTGGCAACTTTAAGAAGAAGAAGCAGTGGATTCTCAAGAGGTGTATCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTATCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCTGCTCGTGCTTATGATATGGCTGCCATCGAATATCGAGGGATCCATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCATGGCTGAAGCCACCACCGCCACCACCCGCCACCCCCAACGGAGCCCGTATGGCGTCGGACCCCCACAAGGAACTCTGCAACTCCACCTCTATCCCAGCAGAAGACACTTCCCTCTTCAAAAACTATCCCTACGATCTTGATTCGTTCCATTCCTTTCAAAAGCAAGAGCTTCTTGAAAGCTGCACGCACCCACTCAACGGTTACGCTAAATCTTCTTCGTCATCCGCCCTTGACCTTCTTTTTCGATCTTCGTTTTTCAAGGAACTGGTTGAGACCAACTCAAGTCTCTTGGTGGATGAGGATGATAATGGAGAAGAGGCAAAGACTCGAGCACAGCTCGACAGTGTCATCAATGAGTTTGAAGACGTCTTCTATGATAGACTTATAGACGTACCATTTGTTTGCAGCTCTGCCAACAAAGATGTGCACGAAAGTGAGCTCCATTCGTTCTTAAATGACACATTTTATCGCTCCAAAGCATTCTGA 1194 46.73 MEAPALVLRNEQNLRTCWTQDQTLATRRVKRRRRDLVTTTAATTVVVDQANKQLCPKKQSDQAATTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAAKAYDLAALKYWGVTTITNFPVLEYGKEIEIMQTMTKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGIHAVTNFDWSNYMAWLKPPPPPPATPNGARMASDPHKELCNSTSIPAEDTSLFKNYPYDLDSFHSFQKQELLESCTHPLNGYAKSSSSSALDLLFRSSFFKELVETNSSLLVDEDDNGEEAKTRAQLDSVINEFEDVFYDRLIDVPFVCSSANKDVHESELHSFLNDTFYRSKAF 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28090916 28094502 - Sed0025094.1 Sed08g1351 723127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1351 397 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 57 256 - -
Sed08g1351 397 Gene3D AP2/ERF domain 171 231 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 Gene3D AP2/ERF domain 72 138 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 FunFam AP2-like ethylene-responsive transcription factor 171 232 - -
Sed08g1351 397 MobiDBLite consensus disorder prediction 56 76 - -
Sed08g1351 397 CDD AP2 171 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 SUPERFAMILY DNA-binding domain 72 137 IPR016177 GO:0003677(InterPro)
Sed08g1351 397 CDD AP2 72 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 Pfam AP2 domain 171 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677(InterPro)
Sed08g1351 397 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 SMART rav1_2 73 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 SMART rav1_2 172 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 ProSiteProfiles AP2/ERF domain profile. 73 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g1351 397 MobiDBLite consensus disorder prediction 56 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1959 Sed-Chr6:43759643 Sed08g1351 Sed-Chr8:28090916 1.30E-71 dispersed
Sed08g1351 Sed-Chr8:28090916 Sed09g1410 Sed-Chr9:37972345 1.50E-72 dispersed
Sed06g0607 Sed-Chr6:5404720 Sed08g1351 Sed-Chr8:28090916 1.10E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39337 PF00847 AP2 3.90E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1351 - - - 0.0