Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1352 ATGATGGCTGGTTGTAGAATTAAGGTTTTGATGGTACTGGTTTCAATGGCTGTTTTGATACCAACTTTCAGAGCTGGCATTGCTGAATTTGATGATTATTTAGTTGAAAAGGAAGCTGAAGCCAAACAAGATGCTCTTGAGGCTTTCGATTCTGAACCCATGAATGTCACTGAGCATCTCAACCACCAAGTTCATTTACTTTTTGAGGGAAAAAATAACACTAGGAGAAGCTTGAGGAAATATAATGGGCCATGCTTGGCTACAAACCCGATCGACCGTTGCTGGCGATGCGACCCAAACTGGGCCAACAACCGTAAGAAGCTTGCCTCTTGCGTGCTTGGTTTTGGCCGAAAAACCACTGGTGGCTTGAAAGGGCGTTTCTACACCGTGACCGACCCATCCGACGACAATTTTGTAGACCCTAAACCGGGAACCCTCCGACACGCTTGCATTCAAAAGAGGCCGTTGTGGATCATATTTGGGCGAAGCATGATCATCAAGCTGCAAAAGGAGCTCTTGGTGACGAGCCACAAGACTATCGACGCACGCGGTGCCAACGTACATATTGCCTATGGTGCTGGCATTAGCATTCAATATGTCCGAAATGTAATCATCCACGGCCTTCACATCCACCACGTCATCCAAGCTAGTGGTGGCATGATCCGAGACTCCTTCAACCATGTCGGCCTTCGAACCGTCAGCGACGGAGACGGCGTCTCCATCTTCGGATCATCCAACGTATGGCTGGATCACCTTTCCATGTCCAACTGCCAGGACGGATTGATCGACGCAATTCAAGGCTCCACCGCAATCACAATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTGTTCGGCGCAAGCGATTCGTACCAAGGGGACTCGATCATGCAAGTGACAGTCGCGTTCAACCATTTCGGAAAGGGATTGATTCAGAGAATGCCAAGGTGCAGATGGGGATTCTTCCATGTAGTTAACAATGACTACACGCACTGGCTGATGTACGCGATCGGCGGGAGCATGCATCCGACGATCATCAGTCAGGGGAACCGATTCATTGCGCCACCAAACCCGGCAGCAAAACAGATTACGAACAGAAACTATGCAACAGAGAGTGTGTGGAAAACATGGACATGGAGATCAGAGGGGGATTTGATGATGAATGGAGCATATTTTGTGCAATCTGGAAATCCAAGCAAAAGAAGGCCATACAGCAGGTTTGATATGATCAGGGCTAAGCCAGGCACTTTTGTTAGAAGGCTCACACGCTTCTCTGGATCACTCAATTGTTACATTGGTCGCCCTTGCTAA 1317 48.22 MMAGCRIKVLMVLVSMAVLIPTFRAGIAEFDDYLVEKEAEAKQDALEAFDSEPMNVTEHLNHQVHLLFEGKNNTRRSLRKYNGPCLATNPIDRCWRCDPNWANNRKKLASCVLGFGRKTTGGLKGRFYTVTDPSDDNFVDPKPGTLRHACIQKRPLWIIFGRSMIIKLQKELLVTSHKTIDARGANVHIAYGAGISIQYVRNVIIHGLHIHHVIQASGGMIRDSFNHVGLRTVSDGDGVSIFGSSNVWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLIQRMPRCRWGFFHVVNNDYTHWLMYAIGGSMHPTIISQGNRFIAPPNPAAKQITNRNYATESVWKTWTWRSEGDLMMNGAYFVQSGNPSKRRPYSRFDMIRAKPGTFVRRLTRFSGSLNCYIGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28116850 28118251 - Sed0004596.1 Sed08g1352 723128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Sed08g1352 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Sed08g1352 438 PANTHER PECTATE LYASE 18-RELATED 16 433 IPR045032 GO:0030570(InterPro)
Sed08g1352 438 SMART amb_all 163 360 IPR002022 -
Sed08g1352 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570(InterPro)
Sed08g1352 438 Gene3D - 88 431 IPR012334 -
Sed08g1352 438 Pfam Pectate lyase 173 354 IPR002022 -
Sed08g1352 438 SUPERFAMILY Pectin lyase-like 89 428 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1558 Sed-Chr6:40394637 Sed08g1352 Sed-Chr8:28116850 2.90E-181 dispersed
Sed08g1352 Sed-Chr8:28116850 Sed11g0767 Sed-Chr11:14088755 1.30E-176 dispersed
Sed01g1830 Sed-Chr1:13466423 Sed08g1352 Sed-Chr8:28116850 1.00E-169 transposed
Sed06g0605 Sed-Chr6:5374957 Sed08g1352 Sed-Chr8:28116850 2.00E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1352 K01728 - csv:101202789 800.045