Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1364 ATGATGAGCGACTCCGTGTTAGCGGTGGAGCGGATTCTTTCGTACAATTTCAAGAACAAGAAGCTGTTAGAGGAAGCCCTCACCCACTCCTCCTACGCAAACTCTGCCTCGTATGAGCGCCTCGAGTTCATCGGCGATTCGGCTATCGGCCTCGCTATTACCAATTACTTTTTTCTTGCTTATCCACACCTCCATCAGGGCCACCTCTCTTCACTCAGGGCTGCTAATATCAGCACCGAGAACCTTGCTCGTGTTGCAGTCCGCCATGGTTTGTATCACTATGTCAGGCGCAATGCTCCCGCCCTTGATAATAAGGTTAGAGAGTTTATCGATTTGGTCGCCATTGAAGACAACTCAGTTCAGTATGGTGAGTTGTTGGTAAAGGCTCCTAAAGTTCTTGCTGACATTGTCGAATCTGTGGCTGGTGCTATCTATGTAGACGTTGATTTTGATCTCCAAAGACTATGGGTGATAATTAGGGGTTTTCTAGAGCCCATATATACTCCGGAGGCCTTACGGGTGAAGCTCCAACCTGTGACTGTGCTGTTTGAAGTTTGCAATAAAAATGGGAAGCAAGTTGACATTAAGAATTGGAGAAATGGTTCCAAGAATGTTGCTAGTGTCTATGTAGATGGTAGTTTTGTTGCCTCGGGTTCTGCGATGCAAAAAGAAATTGCAAAGCTTAATGCTGCAAAAGAAGCTCTCATCAAGTTGTCAACATCGATGGATACAAATATGAGAAATGTTGTAACTATTGATGATGATGATGGTATTGATGAAGCTTTTGAAATTGCAGGGGCAAAGCAGAAATTACAAGATATTTGTTGCAAGAAGAAGTGGTCGAAACCGAATTACAGTATTGAGAAAGATTCAGGGCCTTCACATGAAAGAAGAATTGTATGCTCTGTTAAAATTGCCACTTCTTCTGGTATACTCTGTATATTGGGAGATGAAAAGTCAAGAGTAAGGGATTCAGAGAATTCTGCAGCTTCTTTGATGATTCGAGCTTTACAGGAAAGAAACTATCTCTGA 1032 42.83 MMSDSVLAVERILSYNFKNKKLLEEALTHSSYANSASYERLEFIGDSAIGLAITNYFFLAYPHLHQGHLSSLRAANISTENLARVAVRHGLYHYVRRNAPALDNKVREFIDLVAIEDNSVQYGELLVKAPKVLADIVESVAGAIYVDVDFDLQRLWVIIRGFLEPIYTPEALRVKLQPVTVLFEVCNKNGKQVDIKNWRNGSKNVASVYVDGSFVASGSAMQKEIAKLNAAKEALIKLSTSMDTNMRNVVTIDDDDGIDEAFEIAGAKQKLQDICCKKKWSKPNYSIEKDSGPSHERRIVCSVKIATSSGILCILGDEKSRVRDSENSAASLMIRALQERNYL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28231706 28238790 - Sed0015579.1 Sed08g1364 723140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1364 343 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 266 339 IPR014720 -
Sed08g1364 343 SUPERFAMILY RNase III domain-like 4 164 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Sed08g1364 343 SUPERFAMILY dsRNA-binding domain-like 131 238 - -
Sed08g1364 343 SMART riboneu5 21 172 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sed08g1364 343 Gene3D - 175 248 - -
Sed08g1364 343 CDD RIBOc 21 172 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sed08g1364 343 Gene3D - 265 340 - -
Sed08g1364 343 Gene3D Ribonuclease III domain 1 170 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Sed08g1364 343 SUPERFAMILY dsRNA-binding domain-like 267 341 - -
Sed08g1364 343 FunFam Endoribonuclease dicer-like 1 2 170 - -
Sed08g1364 343 ProSiteProfiles Ribonuclease III family domain profile. 6 149 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Sed08g1364 343 PANTHER DICER-RELATED 3 303 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Sed08g1364 343 SMART DRBM_3 267 338 IPR014720 -
Sed08g1364 343 SMART DRBM_3 178 239 IPR014720 -
Sed08g1364 343 Pfam Double-stranded RNA binding motif 178 238 IPR014720 -
Sed08g1364 343 Pfam Double-stranded RNA binding motif 267 337 IPR014720 -
Sed08g1364 343 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 177 240 IPR014720 -
Sed08g1364 343 Pfam Ribonuclease III domain 39 147 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1364 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2042 Sed-Chr5:33656718 Sed08g1364 Sed-Chr8:28231706 1.20E-29 dispersed
Sed08g1364 Sed-Chr8:28231706 Sed11g1707 Sed-Chr11:32266231 4.00E-146 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42