Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1371 ATGGCCGCCGCAGCCGGAGGAACAGAGGCTTTCCCCGACCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAGCTCGACTTCCTCCCCTTTACCTGCCACGCCTGTCAAAAGGTGTTCTGTTTGGAGCATCGCGGATTCAAATCCCACGACTGCCCGAAATCGGATCAGACCAGCAGAAAAGTGGTGGTGTGTGAAACCTGCTCTACCTCGATCGAGACGACCGGGAAGGACTGGGACGACGAGAGGAGCATTCTAGAGAGGCATGAGAAAGGGGGGGATTGCGATCCGAGGAAGAAGAAGAAGCCCACATGTGGGGCCAGGCGCTGTCGGGAGATTCTCACGTTTTCGAATACTTGTGTGTGTAAGACTTGCCAGTTGAAGGTGTGTTTGAAGCACCGGTTTCCGGCGGAGCATGGGTGTTCCACACCCATGAACACGGCGGCGGATAAAAGGCGCTGGAATGACAAATTTTTGGCTGCCTTGGGTTTCAGGTCGCAATCGCTTAAAGCTTATTGA 519 55.68 MAAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCHACQKVFCLEHRGFKSHDCPKSDQTSRKVVVCETCSTSIETTGKDWDDERSILERHEKGGDCDPRKKKKPTCGARRCREILTFSNTCVCKTCQLKVCLKHRFPAEHGCSTPMNTAADKRRWNDKFLAALGFRSQSLKAY 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28299783 28300808 - Sed0000928.1 Sed08g1371 723147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1371 172 Gene3D - 3 72 IPR035896 -
Sed08g1371 172 ProSiteProfiles Zinc finger AN1-type profile. 99 149 IPR000058 GO:0008270(InterPro)
Sed08g1371 172 ProSiteProfiles Zinc finger AN1-type profile. 12 60 IPR000058 GO:0008270(InterPro)
Sed08g1371 172 SUPERFAMILY AN1-like Zinc finger 11 62 IPR035896 -
Sed08g1371 172 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 10 170 - GO:0005737(PANTHER)
Sed08g1371 172 SMART AN1_Zf_4 105 146 IPR000058 GO:0008270(InterPro)
Sed08g1371 172 SMART AN1_Zf_4 18 57 IPR000058 GO:0008270(InterPro)
Sed08g1371 172 Pfam AN1-like Zinc finger 105 143 IPR000058 GO:0008270(InterPro)
Sed08g1371 172 Pfam AN1-like Zinc finger 18 56 IPR000058 GO:0008270(InterPro)
Sed08g1371 172 SUPERFAMILY AN1-like Zinc finger 64 157 IPR035896 -
Sed08g1371 172 Gene3D - 83 159 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1371 Sed-Chr8:28299783 Sed14g0157 Sed-Chr14:1810889 1.50E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1371 - - - 0.0