Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1372 ATGGCGATTCTGAAGTTCTTCTTCTTCGTTATTCTCACGACGGCGTCGTTTTTGCCCTCATCGGAATCCTCCCCACTCCGGCCGGATTACTACCGGAAATCCTGCCCGAGATTCAGCCAGATCGTCCAAGAAACCGTCACCAACAAGCAGATCACGAGCCCTTCCACCGCCGCCGGAACTCTCCGCCTCCTCCTCCACGACTGCCTCCCCAACGGCTGCGACGCCTCCGTCCTCGTCTCCTCCACTCCCTTCAACAAAGCCGAGCGCGACGCCGACATCAACCTCTCCCTCCCCGGCGACGCCTTCGACCTCGTCGTCCGCGCCAAGACCGCTCTCGAGCTCGCCTGTCCCAACACCGTCTCCTGCGCCGACATCCTCGCCGCCGCCACTCGCGACCTCCTCACCATGGTCGGCGGACCTTACTACAACGTCCTCCTCGGCCGCCGAGACGGCCGCGTCTCCAAAGCCTCCTCCATTCCCGGTTCTCTGCCCTTGGCTGCGTCGCCGATTTCTCAGATTATTGACATTTTCAAAGCTCGCGGGTTTTCTGTGCAGGAAATGGTGGCGTTATCCGGCGCTCATACGATCGGATTCTCGCATTGTAAGGAATTCAGCTCTCAGATCTATAATTATAGCAAATCGTCTTCGTTTGACACTCAGTACAACCCTAGATTCGCTCAAGCGTTGCAGAAGGCTTGTTCTGGTTTTCAGAAGAATCCTACATTGTCCGTTTTCAATGACATTATGACTCCCAACAAGTTTGATAACTCTTACTTCCAGAATCTGCCTAAGGGATTGGGGATCTTGAAGTCTGATCATGGATTGAGCAACGATTGGAGGACGAGGCCGTTCGTGGAGGCGTACGCGGCCGACGAGAATAAATTCTTCAAGGATTTTGCTCGGGCAATGGAGAAGTTGAGTAACTATAGAGTTATGACAGGGAATCAAGGGGAGATTCGGCATAAGTGTGATGCTATTAATTGA 984 54.07 MAILKFFFFVILTTASFLPSSESSPLRPDYYRKSCPRFSQIVQETVTNKQITSPSTAAGTLRLLLHDCLPNGCDASVLVSSTPFNKAERDADINLSLPGDAFDLVVRAKTALELACPNTVSCADILAAATRDLLTMVGGPYYNVLLGRRDGRVSKASSIPGSLPLAASPISQIIDIFKARGFSVQEMVALSGAHTIGFSHCKEFSSQIYNYSKSSSFDTQYNPRFAQALQKACSGFQKNPTLSVFNDIMTPNKFDNSYFQNLPKGLGILKSDHGLSNDWRTRPFVEAYAADENKFFKDFARAMEKLSNYRVMTGNQGEIRHKCDAIN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28302487 28303470 - Sed0015758.1 Sed08g1372 723148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1372 327 FunFam Peroxidase 164 306 - -
Sed08g1372 327 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 Gene3D - 29 327 - -
Sed08g1372 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed08g1372 327 Gene3D Peroxidase, domain 2 164 306 - -
Sed08g1372 327 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 CDD secretory_peroxidase 26 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed08g1372 327 FunFam Peroxidase 29 168 - -
Sed08g1372 327 PANTHER - 9 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 Pfam Peroxidase 42 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 ProSiteProfiles Plant heme peroxidase family profile. 25 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g1372 327 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0165 Sed-Chr8:898595 Sed08g1372 Sed-Chr8:28302487 5.20E-103 dispersed
Sed08g1372 Sed-Chr8:28302487 Sed08g2534 Sed-Chr8:38049478 3.90E-106 dispersed
Sed06g0585 Sed-Chr6:5125060 Sed08g1372 Sed-Chr8:28302487 4.40E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1372 K00430 - csv:101219829 587.415