Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1402 ATGGCTTCCATTTCCATTCATGGAGTATTCTTCTTCTTCTTCCTCTTCTTTTCGGTTTCTCTCTCGGATCCCCGAATCTCGGAATCCGGAAGCATCTGCGGAACCTTCAAGCCTCCGCCGAGCTCCAAATTCATCCCGACCTTCATCGAAGAAATGGAAGCCATATCCGAGCTTCTCACAACTCACACTTGGACCACTCACTTCGTCAATTCCACTCCTCCGATGTTCGCCCTATCGCAATGCTTCGACGATCTCACTCACACCGATTGCCTTCTCTGCTACGCTGCCAGCCGCACTGCCCTCCCCCGCTGCCTCCCCGCCGTTGCTGCCCGAATCTTCCTCGACGGATGCTTCCTCCGCTACGACAATTACAGCTTCTACAAGGAATCAACCGATCCGTTTAGGGATTCGGTGAATTGCACCTCGGCATTGGGGGAAGTTGGTGAATCTGAGAGGCTGGGGTTTGGGAATGATGTTAGGATTGTTGTCGAGGCTGTGACGAGGACGGCGTTGGCGAAGGGCGGATTCGGGATTGGTGAAGTTAATGGACTGTTTGGTTTGGCCCAGTGTTGGGGGAGTGTTGAGCCTGAGGGTTGTAGGGCTTGTTTGGAGAAGGCAAAGAGGAGTATTAGAAGCTGTGTGCCCAGTAAAGAAGGGAGGGCTTTGAATGCTGGATGTTATTTGAGGTATTCAACTGTGAAATTCTATAATGATGAGGATCAAGAACAGGGTCATGATGGATTTTCTGGAAGAAGAGCTGTTGTTGCCATTGTTTTAGCTTCAGCTGCTTTCCTAATCATTTTCTGTTCTGCTGTTTTTGCATGCTATACAAGAATATCAAAGTTCAAGAAAGAGAAGAAAAGACAATCCCTTATTCCGATTTCCTTTAAGGATTCCGACTTGAATTTCAAGTACGAAACACTCGAAAAGGCAACTGAGTACTTCAACCCGTCAAATAAGATAGGCCAAGGTGGAGCTGGTTCTGTTTATAAAGGGACTCTTCCAAATGGGAAAATTGTTGCAGTGAAGAGATTGATTTTCCATACAAGGCAATGGGTTGATGAGTTCTTCAATGAGGTGAACTTGATCCGTGGAATCCAACACAAAAATCTTCTTTCCCTTTTAGGATGCAGCATCGAAGGGCCTGAAAGTCTGCTCGTCTACGAGTATGTTCCGAACCGGAGCCTCGATCACTTCATATTCGATAAGAACAAGGTTCAGATTCTAAATTGGAAGCAGCGGTTCGACATTATTGTGGGAACAGCTGAGGGACTTGCACATCTTCATGAAGGTTGTAAGATGAGAATAATTCATAGAGACATAAAGAGTAGCAATGTTCTATTGGATGAAAATTTCAATCCGAAGATTGCAGATTTTGGCCTCGCTCGACATTTTGCTGCCGATCAGACTCATCTTAGCACAGGAGTTGCTGGGACACTAGGTTACATGGCGCCCGAGTATCTTGTTCGAGGACAACTTACAGAAAAGGCAGATGTTTATAGCTTTGGAGTGCTGATGCTCGAGATTGTTTGCGGTAGAAGAAATAGTTCCTTCACAGAGAACTCTATCCCACTCCTCCAAACAGTAAGGTTTGGGATCTATACAAATCAAAGAGATTAA 1620 45.86 MASISIHGVFFFFFLFFSVSLSDPRISESGSICGTFKPPPSSKFIPTFIEEMEAISELLTTHTWTTHFVNSTPPMFALSQCFDDLTHTDCLLCYAASRTALPRCLPAVAARIFLDGCFLRYDNYSFYKESTDPFRDSVNCTSALGEVGESERLGFGNDVRIVVEAVTRTALAKGGFGIGEVNGLFGLAQCWGSVEPEGCRACLEKAKRSIRSCVPSKEGRALNAGCYLRYSTVKFYNDEDQEQGHDGFSGRRAVVAIVLASAAFLIIFCSAVFACYTRISKFKKEKKRQSLIPISFKDSDLNFKYETLEKATEYFNPSNKIGQGGAGSVYKGTLPNGKIVAVKRLIFHTRQWVDEFFNEVNLIRGIQHKNLLSLLGCSIEGPESLLVYEYVPNRSLDHFIFDKNKVQILNWKQRFDIIVGTAEGLAHLHEGCKMRIIHRDIKSSNVLLDENFNPKIADFGLARHFAADQTHLSTGVAGTLGYMAPEYLVRGQLTEKADVYSFGVLMLEIVCGRRNSSFTENSIPLLQTVRFGIYTNQRD 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28596307 28600007 + Sed0018297.1 Sed08g1402 723178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1402 539 Gene3D Transferase(Phosphotransferase) domain 1 391 537 - -
Sed08g1402 539 ProSiteProfiles Protein kinase domain profile. 315 539 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1402 539 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 174 527 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Sed08g1402 539 FunFam Cysteine-rich receptor-like protein kinase 2 282 390 - -
Sed08g1402 539 FunFam Cysteine-rich receptor-like protein kinase 3 138 235 - -
Sed08g1402 539 Pfam Salt stress response/antifungal 155 232 IPR002902 -
Sed08g1402 539 Pfam Salt stress response/antifungal 57 124 IPR002902 -
Sed08g1402 539 FunFam Lectin-domain containing receptor kinase A4.3 391 538 - -
Sed08g1402 539 Gene3D Phosphorylase Kinase; domain 1 275 390 - -
Sed08g1402 539 Gene3D - 157 235 IPR038408 -
Sed08g1402 539 Gene3D - 43 126 IPR038408 -
Sed08g1402 539 SMART serkin_6 315 531 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1402 539 FunFam Cysteine-rich receptor-like protein kinase 42 52 126 - -
Sed08g1402 539 Pfam Protein kinase domain 317 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1402 539 ProSiteProfiles Gnk2-homologous domain profile. 26 126 IPR002902 -
Sed08g1402 539 ProSiteProfiles Gnk2-homologous domain profile. 135 235 IPR002902 -
Sed08g1402 539 SUPERFAMILY Protein kinase-like (PK-like) 291 527 IPR011009 -
Sed08g1402 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2665 Sed-Chr3:42895458 Sed08g1402 Sed-Chr8:28596307 6.60E-120 dispersed
Sed08g1402 Sed-Chr8:28596307 Sed01g1439 Sed-Chr1:10578932 3.90E-79 dispersed
Sed08g1402 Sed-Chr8:28596307 Sed06g1658 Sed-Chr6:41341320 7.50E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79631 PF00069 Pkinase 2.00E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1402 - - - 0.0