Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1405 ATGTCTTCTTCCACCTACACAAATTCCCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTTCCCGAATGCATTTTTGCCCCGTATTTTCCCCCCGAGGAGCCACAAAAGTTCACCAGTGTCCACAAGATCTTCGGCGCCAGAAACGTCGGCAAACTGCTGAACGGAGTTCAGCCACACCTGCGGGAGGATGCTGTGAGCTCACTTGCCTACGAGGCCGAGGCTAGGATAAAAGACCCTGTGTACGGTTGTGTTGGTGCCATTTCTATCCTCCAAAGTCAAGTCATAAAGCTTCAAAAAGAACTCGACGCCACCAATGCCAGCCTCATTCGGTACGCCTGCAAACTTCCCGCTCCATCCCCGTCCTCGTCGAGCCACGAGAAAAGCTCATCTACCAGCTCTAGCTATGGCCACTGCTATTCTGGCCTCTACTTTTCTCCATGGAGCAACAGCCATGGCCCTAGTGAAGATATTGATCACCATGACAAAGGAGAATACAAGTAA 507 51.28 MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKLPAPSPSSSSHEKSSSTSSSYGHCYSGLYFSPWSNSHGPSEDIDHHDKGEYK 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28698955 28699600 - Sed0028052.1 Sed08g1405 723181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1405 168 Coils Coil 89 109 - -
Sed08g1405 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 121 - -
Sed08g1405 168 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Sed08g1405 168 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Sed08g1405 168 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0521 Sed-Chr6:4548646 Sed08g1405 Sed-Chr8:28698955 6.20E-66 dispersed
Sed08g0088 Sed-Chr8:496474 Sed08g1405 Sed-Chr8:28698955 3.60E-48 dispersed
Sed08g1405 Sed-Chr8:28698955 Sed12g2463 Sed-Chr12:34257423 1.90E-48 dispersed
Sed06g0520 Sed-Chr6:4546939 Sed08g1405 Sed-Chr8:28698955 5.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39347 PF03195 LOB 1.40E-39 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1405 - - - 0.0