Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1405 | ATGTCTTCTTCCACCTACACAAATTCCCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTTCCCGAATGCATTTTTGCCCCGTATTTTCCCCCCGAGGAGCCACAAAAGTTCACCAGTGTCCACAAGATCTTCGGCGCCAGAAACGTCGGCAAACTGCTGAACGGAGTTCAGCCACACCTGCGGGAGGATGCTGTGAGCTCACTTGCCTACGAGGCCGAGGCTAGGATAAAAGACCCTGTGTACGGTTGTGTTGGTGCCATTTCTATCCTCCAAAGTCAAGTCATAAAGCTTCAAAAAGAACTCGACGCCACCAATGCCAGCCTCATTCGGTACGCCTGCAAACTTCCCGCTCCATCCCCGTCCTCGTCGAGCCACGAGAAAAGCTCATCTACCAGCTCTAGCTATGGCCACTGCTATTCTGGCCTCTACTTTTCTCCATGGAGCAACAGCCATGGCCCTAGTGAAGATATTGATCACCATGACAAAGGAGAATACAAGTAA | 507 | 51.28 | MSSSTYTNSPCAACKFLRRKCLPECIFAPYFPPEEPQKFTSVHKIFGARNVGKLLNGVQPHLREDAVSSLAYEAEARIKDPVYGCVGAISILQSQVIKLQKELDATNASLIRYACKLPAPSPSSSSHEKSSSTSSSYGHCYSGLYFSPWSNSHGPSEDIDHHDKGEYK | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28698955 | 28699600 | - | Sed0028052.1 | Sed08g1405 | 723181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1405 | 168 | Coils | Coil | 89 | 109 | - | - | |
Sed08g1405 | 168 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 121 | - | - | |
Sed08g1405 | 168 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
Sed08g1405 | 168 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Sed08g1405 | 168 | MobiDBLite | consensus disorder prediction | 147 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0521 | Sed-Chr6:4548646 | Sed08g1405 | Sed-Chr8:28698955 | 6.20E-66 | dispersed | |
Sed08g0088 | Sed-Chr8:496474 | Sed08g1405 | Sed-Chr8:28698955 | 3.60E-48 | dispersed | |
Sed08g1405 | Sed-Chr8:28698955 | Sed12g2463 | Sed-Chr12:34257423 | 1.90E-48 | dispersed | |
Sed06g0520 | Sed-Chr6:4546939 | Sed08g1405 | Sed-Chr8:28698955 | 5.20E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39347 | PF03195 | LOB | 1.40E-39 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1405 | - | - | - | 0.0 |