Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1406 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGCCTTTCTATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGAGTTTACAATATTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGACGATTCGGGTAGTAGTGAGAGGACTTATCGATGTGCCTCTCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATCAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATTAGGACACTATGTGAAGCCCCCTGTTCTGAGGGTCTCGTCGAGTTTCATGGAGCGTTTTATACCCCTGACTCTGGGCAAATTAGCATAGCTCTGGAGTACATGGATGGAGGGTCATTGGCCGATGTCCTGCATTTGAAGAAATGTATACCAGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGATATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAAATTACAGATTTCGGCATAAGTGCTGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTTGGAACTGTCACATACATGTCACCAGAGAGAATTCGAAATGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTATTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACAGAAGGTCTAGTGAACCTTATGTTACAGATCTTGGATGATCCATCTCCATCACCATCAAAACAGAAGTTTTCACCGGAGTTTTGTTCATTCGTCGATGCCTGTTTGCAGAAAGATGCTGATGCTCGGCCGACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAGAAATATGAGGATAAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTGTACAATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATATTTGCCAAACTATCAGACATTCGAAGTACACTAGCGGGAGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCGTAAGGGTGTCTGGATCCTTCATCATTGGAAACCAGTTCCTCATATGTGGGGACGGTGTCCAAGTTGAGGGATTGCCAAATTTTAAGGATCTCTCCATTGACATAGCGAGTAAGAAAATGGGATCGTTCAAAGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGGTACTATATAGCTGCACAAGAGCTTTATATAATTCAGTAG 1557 42.71 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNINELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLHLKKCIPEPVLSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDKQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYNESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAVRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDIASKKMGSFKEQFIIEPSNLIGRYYIAAQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28700248 28707174 + Sed0020340.1 Sed08g1406 723182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1406 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1406 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Sed08g1406 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Sed08g1406 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 60 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed08g1406 518 Gene3D - 363 517 - -
Sed08g1406 518 CDD PKc_MAPKK_plant_like 84 343 - -
Sed08g1406 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Sed08g1406 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1406 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1406 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Sed08g1406 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Sed08g1406 518 Gene3D Transferase(Phosphotransferase) domain 1 159 362 - -
Sed08g1406 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Sed08g1406 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Sed08g1406 518 SUPERFAMILY Protein kinase-like (PK-like) 85 367 IPR011009 -
Sed08g1406 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1406 K20607 - - csv:101217978 989.564
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1406 Sed-Chr8:28700248 Sed11g0009 Sed-Chr11:81741 1.20E-61 dispersed
Sed06g0519 Sed-Chr6:4514259 Sed08g1406 Sed-Chr8:28700248 3.50E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0890 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed08g0891 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed12g1735 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1736 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1737 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed11g0009 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0012 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0010 . 32 312 MAP Kinase Kinase Gene Family AT4G26070 67.0 1.4e-109 394.0
Sed03g1751 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 1.8e-106 383.6
Sed11g0011 . 1 249 MAP Kinase Kinase Gene Family AT4G26070 65.2 1.6e-94 344.0
Sed03g1752 . 26 242 MAP Kinase Kinase Gene Family AT4G26070 52.5 5.6e-63 239.2
Sed08g0890 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed08g0891 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed12g1735 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1736 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1737 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed11g0009 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0012 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.3e-109 394.0
Sed03g1751 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.8 1.5e-108 390.6
Sed11g0011 . 1 223 MAP Kinase Kinase Gene Family AT4G29810 65.6 4.8e-83 305.8
Sed03g1752 . 10 239 MAP Kinase Kinase Gene Family AT4G29810 58.8 6.3e-75 278.9
Sed08g1406 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.7 8.9e-227 783.9
Sed06g0519 . 101 432 MAP Kinase Kinase Gene Family AT5G40440 59.4 1.6e-111 401.0
Sed11g0011 . 35 247 MAP Kinase Kinase Gene Family AT5G40440 52.3 1.4e-57 221.9
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.0 9.4e-133 471.1
Sed06g0045 . 68 352 MAP Kinase Kinase Gene Family AT1G51660 75.1 2.3e-123 439.9
Sed01g1782 . 3 313 MAP Kinase Kinase Gene Family AT1G51660 50.2 2.3e-83 307.0
Sed08g2774 . 52 320 MAP Kinase Kinase Gene Family AT1G51660 53.2 7.0e-80 295.4
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 66.5 1.3e-128 457.2
Sed06g0045 . 66 352 MAP Kinase Kinase Gene Family AT3G21220 73.5 2.0e-124 443.4
Sed01g1782 . 32 311 MAP Kinase Kinase Gene Family AT3G21220 53.9 5.5e-82 302.4
Sed08g2774 . 52 316 MAP Kinase Kinase Gene Family AT3G21220 52.8 3.9e-80 296.2
Sed03g1751 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 82.8 4.2e-170 595.1
Sed12g1735 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1736 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1737 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed08g0890 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed08g0891 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed11g0009 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed11g0012 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed03g1752 . 1 234 MAP Kinase Kinase Gene Family AT5G56580 83.4 2.0e-108 390.2
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.5e-95 347.4
Sed11g0011 . 1 238 MAP Kinase Kinase Gene Family AT5G56580 60.4 3.3e-82 303.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G18350 64.2 2.8e-106 382.9
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G18350 60.6 2.2e-103 373.2
Sed06g0045 . 68 325 MAP Kinase Kinase Gene Family AT1G18350 51.9 4.4e-75 279.3
Sed01g1782 . 1 295 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.8e-77 285.4
Sed08g2774 . 52 302 MAP Kinase Kinase Gene Family AT3G06230 56.1 2.9e-76 283.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G73500 66.7 7.7e-112 401.4
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G73500 63.7 6.1e-109 391.7
Sed06g0045 . 69 325 MAP Kinase Kinase Gene Family AT1G73500 52.1 1.1e-76 284.6
Sed06g2275 . 72 331 MAP Kinase Kinase Gene Family AT1G73500 51.7 5.2e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79632 PF00069 Pkinase 4.70E-59 CL0016 Sed PK