Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1406 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGCCTTTCTATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGAGTTTACAATATTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGACGATTCGGGTAGTAGTGAGAGGACTTATCGATGTGCCTCTCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATCAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATTAGGACACTATGTGAAGCCCCCTGTTCTGAGGGTCTCGTCGAGTTTCATGGAGCGTTTTATACCCCTGACTCTGGGCAAATTAGCATAGCTCTGGAGTACATGGATGGAGGGTCATTGGCCGATGTCCTGCATTTGAAGAAATGTATACCAGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGATATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAAATTACAGATTTCGGCATAAGTGCTGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTTGGAACTGTCACATACATGTCACCAGAGAGAATTCGAAATGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTATTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACAGAAGGTCTAGTGAACCTTATGTTACAGATCTTGGATGATCCATCTCCATCACCATCAAAACAGAAGTTTTCACCGGAGTTTTGTTCATTCGTCGATGCCTGTTTGCAGAAAGATGCTGATGCTCGGCCGACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAGAAATATGAGGATAAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTGTACAATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATATTTGCCAAACTATCAGACATTCGAAGTACACTAGCGGGAGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCGTAAGGGTGTCTGGATCCTTCATCATTGGAAACCAGTTCCTCATATGTGGGGACGGTGTCCAAGTTGAGGGATTGCCAAATTTTAAGGATCTCTCCATTGACATAGCGAGTAAGAAAATGGGATCGTTCAAAGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGGTACTATATAGCTGCACAAGAGCTTTATATAATTCAGTAG 1557 42.71 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNINELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLHLKKCIPEPVLSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDKQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYNESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAVRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDIASKKMGSFKEQFIIEPSNLIGRYYIAAQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28700248 28707174 + Sed0020340.1 Sed08g1406 723182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1406 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1406 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Sed08g1406 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Sed08g1406 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 60 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed08g1406 518 Gene3D - 363 517 - -
Sed08g1406 518 CDD PKc_MAPKK_plant_like 84 343 - -
Sed08g1406 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Sed08g1406 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1406 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1406 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Sed08g1406 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Sed08g1406 518 Gene3D Transferase(Phosphotransferase) domain 1 159 362 - -
Sed08g1406 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Sed08g1406 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Sed08g1406 518 SUPERFAMILY Protein kinase-like (PK-like) 85 367 IPR011009 -
Sed08g1406 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1406 Sed-Chr8:28700248 Sed11g0009 Sed-Chr11:81741 1.20E-61 dispersed
Sed06g0519 Sed-Chr6:4514259 Sed08g1406 Sed-Chr8:28700248 3.50E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79632 PF00069 Pkinase 4.70E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1406 K20607 - csv:101217978 989.564