Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1411 ATGGAGTCCCTTGTTAATGGTATGGGTTCTTTTCTGAAAACTCAGAACCCGACATCTACATCGGGGACTCTCGATTCGTCTTGCCACGCTTCTCCTAAACAATCTAGGGATGAAGTTGCTTCTTCGACATCCTATGTTATGGCTCAAAGTTGTGCCAAGAAACCCGTTTGTCATCCTAATGGTTCTTCTGAAAGTAATAAAAATCATTCCAAGAATGTGAATCATGATGTGCAGCTTGAAGGTTCAACTGATGTGAAAAAACTTGCACCCATTTCCAATAAGGGGAAATCCGAGCTTGTAAACCGGACTGATATTTCATATAAATCATCTGAAACTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGATGGAGCAAAACCTCTTGTGAAGCATATTATCGATGATTCTAAGGATTGTTGTTCAAGTGGCTCGGAAGAATCTGGAAATCAAGTATTGAGCGCATCGAAAGGAGCTTCCGCGCTGATAAACAATCAACAAAAGTCGCAGCATGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGTAGCATTGAAAAGTCTTGTGAAAGTGTGGACATCACCAATTCCTATGATCTTGACAAAAGCAGAAAAACAAGTGTTTACCGAGGCAGCACCGGCAGTGATATCAGTGATGAGAGCAACTCGAGTAGTTTAAGCAATGCTATGCATAAGCCCCATCAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGACGGGACGTTAGGGCTGAATCATTTCAGGTTGCTGCGGAGACTGGGATGTGGCGATATTGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTATACACATTTTGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTTTGTCCCGGGGGCGACTTGCACGCGCTTAGGCAGAGGCAACCTGGAAAGTTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCAATGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTGGTGAGAGATGATGGGCATATAATGCTATCTGATTTTGACCTGTCACTTAGATGTGCCGTTTCCCCGACCCTTGTTAAATCATCGAACTTTGGTTTAGAATCTAAAAGCTCAGGATACTGTGTTCAGCCTGCTTGCATCGAGCCGACTTGCATAATGCAGCCAAATTGTATCCAGCCATCATGTTTTGCGCCTCGCTTCCTAAGCAGACATAAGAAAGAAAAAAAGTCCAAACCAAAGAGTGAAGTTTATCATCAAGTGAGCCCTCTACCGGAGCTCATTGCCGAGCCCACAAGTGCGAGATCGATGTCGTTTGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAGGGTGAAGGGCATGGCAGTGCTGTGGACTGGTGGACTTTCGGGATCTTTCTCTACGAGCTTTTGTTCGGTAGAACTCCATTCAAGGGGGCTGGGAACCGCGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCAAAGGCTTGCTTGTAAAAGAACCACAGCATCGTCTTGCTTACAGGCGTGGCGCTACCGAGATCAAGCAACATCCTTTCTTCCAGAGTGTGAACTGGGCTCTCATCCGCTGCGCCAATCCTCCCGAGGTGCCAAGAGTCGATGTCAATGACTTCTCTTCCAGAATGGAGACACCACACGCACCAGCAGGCGACAAGATGCCGGGAGTCGATGTAAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2022 45.0 MESLVNGMGSFLKTQNPTSTSGTLDSSCHASPKQSRDEVASSTSYVMAQSCAKKPVCHPNGSSESNKNHSKNVNHDVQLEGSTDVKKLAPISNKGKSELVNRTDISYKSSETSFQKKVPLEGDGAKPLVKHIIDDSKDCCSSGSEESGNQVLSASKGASALINNQQKSQHAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESVDITNSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMHKPHQANDTRWEAMQVVRSHDGTLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNFGLESKSSGYCVQPACIEPTCIMQPNCIQPSCFAPRFLSRHKKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIKGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVNDFSSRMETPHAPAGDKMPGVDVKPSGNYLEIDFF 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28759496 28763305 + Sed0012721.1 Sed08g1411 723187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1411 673 Gene3D Transferase(Phosphotransferase) domain 1 365 433 - -
Sed08g1411 673 FunFam Serine/threonine-protein kinase D6PK-like 279 364 - -
Sed08g1411 673 Gene3D Transferase(Phosphotransferase) domain 1 512 635 - -
Sed08g1411 673 MobiDBLite consensus disorder prediction 229 257 - -
Sed08g1411 673 CDD STKc_phototropin_like 280 638 - -
Sed08g1411 673 MobiDBLite consensus disorder prediction 1 41 - -
Sed08g1411 673 FunFam serine/threonine-protein kinase D6PK-like 512 635 - -
Sed08g1411 673 FunFam serine/threonine-protein kinase D6PK-like 365 432 - -
Sed08g1411 673 ProSiteProfiles Protein kinase domain profile. 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1411 673 SMART serkin_6 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1411 673 Gene3D Phosphorylase Kinase; domain 1 279 364 - -
Sed08g1411 673 PANTHER FLIPPASE KINASE 1-RELATED 134 638 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed08g1411 673 SUPERFAMILY Protein kinase-like (PK-like) 256 643 IPR011009 -
Sed08g1411 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1411 673 Pfam Protein kinase domain 514 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1411 673 Pfam Protein kinase domain 282 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1411 673 MobiDBLite consensus disorder prediction 229 256 - -
Sed08g1411 673 MobiDBLite consensus disorder prediction 8 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1411 Sed-Chr8:28759496 Sed11g1164 Sed-Chr11:27556452 7.80E-194 dispersed
Sed06g0513 Sed-Chr6:4427113 Sed08g1411 Sed-Chr8:28759496 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79633 PF00069 Pkinase 7.80E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1411 K08286 - csv:101219962 1186.79