Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1415 ATGGGTTCTGGTACTGGGTTTTATTCAACTGTGGATTTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATTAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCCAGAGAGGTTGCGATGTTGTCCAAAGTGCAGCACAAGAATTTAGTGAAGTTTGTTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACTGAATTACTCACAGGTGGAACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTCGATGTAGCGATCGGGTTTGCGCTTGATATTGCTCGAGCTATGGAGTGTATACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTAGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGCACAGTGACTTTGAAACATGGGGATAAAAAACACTACAATCATAAAGTCGATGCTTACAGCTTTGCCATTGTATTATGGGAGCTCATCCTTAACCGGTTGCCTTTTGAAGGCATGTCGAATTTACAGGCTGCATATGCAGCTGCTTTTAAGAACATGAGGCCAAGTGCTGAAAATCTTCCAGAGGATTTAGCTTTAATAGTGACATCATGTTGGAGAGAGGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTACTGCAGTCTCTCTCTAGAATATCGCCACGAGCACCCGTGATTCCTCCTCGGATATATGCTTCTGATAATGTCGTAATGCCACCTGAATCTCCTGGTACAAATTCCTTGATGGATGTCAGGCATGGCTCGGGGGAAGCTTCACATGGAATGATCGAAGAAAACCCGAAACGCTCCTTTTTCTGCTTTAACAAATGTTACTGA 1059 43.34 MGSGTGFYSTVDFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFVGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAMECIHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPVIPPRIYASDNVVMPPESPGTNSLMDVRHGSGEASHGMIEENPKRSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28795625 28799706 + Sed0018409.1 Sed08g1415 723191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1415 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 CDD STKc_MAP3K-like 32 286 - -
Sed08g1415 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Sed08g1415 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
Sed08g1415 352 Gene3D Transferase(Phosphotransferase) domain 1 106 297 - -
Sed08g1415 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Sed08g1415 352 PANTHER SERINE-THREONINE PROTEIN KINASE 20 290 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed08g1415 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Sed08g1415 352 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1415 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1113 Sed-Chr4:21370806 Sed08g1415 Sed-Chr8:28795625 4.00E-12 dispersed
Sed08g1415 Sed-Chr8:28795625 Sed12g2475 Sed-Chr12:34347505 4.00E-157 dispersed
Sed08g1415 Sed-Chr8:28795625 Sed03g0116 Sed-Chr3:718063 1.20E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79634 PF07714 PK_Tyr_Ser-Thr 1.00E-56 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1415 - - - 0.0