Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1434 ATGTCTAGCACTACAATTGATGCTGCTCCCAAGGGTGGGTTTAGTTTTGATCTCTGCAGAAGAAATGATATGCTTGCAAAGAAGGGTCTTAAATCTCCGACTTACCTCAAGACTGGAACTACCATTGTGGGTTTAATCTTCAAGGATGGTGTTGTTCTTGGAGCAGATACACGAGCTACTGAAGGCCCTATTGTTGCTGACAAAAACTGCGAGAAAATTCATTACATGGCACCAAATATATATTGTTGTGGTGCAGGAACTGCTGCTGATACTGAGGCTGTAACGGACATGGTCAGCTCTCAATTGCAGTTGCATCGCCACCACACCGGTCGAGAATCAAGGGTCATTACTGCACTGACCCTTCTCAAGAAACACCTTTTTGGCTATCAAGGTTACGTTTCAGCTGCTTTGGTACTTGGCGGGGTTGATGTTACTGGACCTCATTTACACACGATATATCCTCACGGGTCGACCGACACATTGCCATTTGCTACCATGGGATCGGGTTCTCTAGCTGCAATGTCGGTATTTGAATCAAAGTACAAAGAAGGCCTGACGAGGGAAGAAGGGATTCAACTTGTAACTGAGGCGATATGTTCCGGGATATTTAATGACTTGGGTAGTGGAAGTAATGTCGACGTTTGTGTTATTACCAAGGTTTGCGATCTTAAGGTGTCTCGACTGCATCGAAGAATGTAG 699 44.92 MSSTTIDAAPKGGFSFDLCRRNDMLAKKGLKSPTYLKTGTTIVGLIFKDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRHHTGRESRVITALTLLKKHLFGYQGYVSAALVLGGVDVTGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVTEAICSGIFNDLGSGSNVDVCVITKVCDLKVSRLHRRM 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28901102 28905833 - Sed0012147.5 Sed08g1434 723210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1434 232 Pfam Proteasome subunit 37 217 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Sed08g1434 232 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 40 229 IPR029055 -
Sed08g1434 232 PRINTS Proteasome component signature 203 214 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Sed08g1434 232 PRINTS Proteasome component signature 178 189 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Sed08g1434 232 PRINTS Proteasome component signature 47 62 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Sed08g1434 232 PRINTS Proteasome component signature 167 178 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Sed08g1434 232 ProSiteProfiles Proteasome beta-type subunit profile. 39 217 IPR023333 -
Sed08g1434 232 PANTHER METALLOPROTEASE TLDD 30 220 IPR023333 -
Sed08g1434 232 CDD proteasome_beta_type_7 40 219 - -
Sed08g1434 232 FunFam Proteasome subunit beta type-2 40 231 - -
Sed08g1434 232 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 219 IPR029055 -
Sed08g1434 232 ProSitePatterns Proteasome beta-type subunits signature. 43 90 IPR016050 GO:0005839(InterPro)|GO:0051603(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1434 K02739 - - csv:101206991 424.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1432 Sed-Chr8:28901102 Sed08g1434 Sed-Chr8:28901102 5.30E-125 dispersed
Sed08g1434 Sed-Chr8:28901102 Sed01g0930 Sed-Chr1:6723977 5.60E-06 dispersed
Sed08g1433 Sed-Chr8:28901102 Sed08g1434 Sed-Chr8:28901102 5.30E-125 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003205 1 2 1 2 1 2 2 1 2 1 2 2 2 1 2 2 2 2 2 2 2 1 1 1 1 2 1 6 1 1 51