Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1454 ATGGGAAGGCGATCCACATGGGTTGCTCTTCTCGTCCTCTCTCTTGTTCAGATTGTTTCTTCCACTCTTTCTGTTCATCTATTCGATCTTCAGAATTATAGAGTTTCTTCCATAAAGAGTACTCCGAAGCAGGATTTGAACAACGCCCATGAGGTACATTGCTCGAGAGAAAGAAGTAGGGCGGCATGGAAAATAATTGAGGAGTATCTAATGCCCTTCGTGGATAAAAGGAAATACAAGATTTCGACTGAGTGTAGGCTTCACCCGGATAATGATATGTTTAGAGATCAAGAACAGCACAAGAAGCATCTAGATTTCAATGACTGGAAGTGTGGATATTGTAGAAAACGATTCTATGAAGAGAAGAATCTCGACCAGCATTTTGTCAACAGGCACTATAATTTGCTCAATGTGAGTCGAAGCAAGTGCTTAGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTAATCAATACGGTATCACAGAAAAGTAAATGCAATCCTGCTGCTGCTGCAAGAAATAAACACATGTGTGAGGCTCTTGCTGACAGTTGTTTTCCCATCGATGCGGGTGCTTCGGCCAGCCATCTTCACGAGTTCTTCTTGCGCCAGTTTTGTGATGGACACACTTGTAGTGGAAAGCTAAAACCTTTCTCCAGAGGTCAACAGGTTAGGACGAGTGCATTCTACGTCGTTATTTCAGTTTTGACAGTACTTTTTGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAAGAGGGGAATGAAAACAAGACCGCAGGTGCTGAAGCGCCTCTCAGAAAGTGGAAGAAAGAAAAAACCTTCATAG 828 42.27 MGRRSTWVALLVLSLVQIVSSTLSVHLFDLQNYRVSSIKSTPKQDLNNAHEVHCSRERSRAAWKIIEEYLMPFVDKRKYKISTECRLHPDNDMFRDQEQHKKHLDFNDWKCGYCRKRFYEEKNLDQHFVNRHYNLLNVSRSKCLADLCGALHCDHVINTVSQKSKCNPAAAARNKHMCEALADSCFPIDAGASASHLHEFFLRQFCDGHTCSGKLKPFSRGQQVRTSAFYVVISVLTVLFVLFFYVFIYLYKRGMKTRPQVLKRLSESGRKKKPS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29134933 29140183 + Sed0001198.1 Sed08g1454 723230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1454 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 132 IPR013087 -
Sed08g1454 275 ProSitePatterns Zinc finger C2H2 type domain signature. 111 132 IPR013087 -
Sed08g1454 275 PANTHER ZINC FINGER PROTEIN-RELATED 15 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0475 Sed-Chr6:4136623 Sed08g1454 Sed-Chr8:29134933 1.40E-122 dispersed
Sed06g0476 Sed-Chr6:4136623 Sed08g1454 Sed-Chr8:29134933 1.40E-122 dispersed
Sed06g0477 Sed-Chr6:4136623 Sed08g1454 Sed-Chr8:29134933 3.50E-105 dispersed
Sed06g0478 Sed-Chr6:4136623 Sed08g1454 Sed-Chr8:29134933 3.50E-105 dispersed
Sed08g0052 Sed-Chr8:317893 Sed08g1454 Sed-Chr8:29134933 7.10E-88 dispersed
Sed08g0053 Sed-Chr8:317893 Sed08g1454 Sed-Chr8:29134933 3.20E-82 dispersed
Sed08g1454 Sed-Chr8:29134933 Sed08g1455 Sed-Chr8:29134933 1.30E-131 tandem
Sed06g0473 Sed-Chr6:4136623 Sed08g1454 Sed-Chr8:29134933 1.50E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39348 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1454 - - - 0.0