Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1458 ATGGTGCAAGAAGGATCCACAGCAAGCGCTTCAGAACCAGAACTCGAGACGATCAGATCGAAACCGCTCGCAATTGGAAATGATGGAGAGAGTTTCTTTAGCCCTAGATTCAAATCGGTGGCCGCCATGGCCGGCTGGGACGAAGAGGCGCTTTTAATTGCGAGCCTCGTCGTCGATGACACACCGGATAGAGAGTTCCGCCCGAAGAAGCGCTCGGTTCTGCACTGCAAGAGTCCTCTGTCTGGTTCGAGAAGGAAACGTAGGGCTTCGACGAACTTCATTTCGATTCCGGTGGCTGTTCTAAACCTTGATGAAGAACAATCGACTGTCGAAGGTGATCCAAAACAAGATGAAGAAACTGTAGAGGCTGAACCAAAGAAAATTGATTCATTAGTTGAACAGAAAGTTGGTGCCTCTTCTTCTTCTGTAACATGTTCAACTCTCCCATGCATGGATAAGCTAAGAGAAGAGCTTTCTTGTGCTATTTGCTTGGAAATTTGTTTTGAACCTAGTACCACACCTTGTGGACATAGTTTCTGCAAGAAATGTCTAAGATCTTCTGCTGACAAATGTGGAAAAAAGTGCCCTAAATGCAGACAGCTAACAAGCAATGGAAGATCGTGTACTGTAAATACAGTTCTTTGGAACACCATACAACTTCTTTTCCCTCAGGAGGTTGAAGCAAGAAAGGAAGCAAAAAAAGGCTGCGGTAGCCATGAAAAGAAGAAGATTCTAGACCCAGAAAAGGCCTTTTATAGCAGTTTGCAGACACGTGCGATCGGAACTTTAAGTAGACATGTCAGTAGTAGTAGCTCAAGAAGAAGAGGGGGAGTAACTGTTCGAGATGAGGATGATGAATCGAACAGCAGGACAACACAGCAAGCTGCATTTTCGAATGCTGAAAGCAGAGTTCATTCCAGAATGCATCATCGAAGTATTCGACCGGTGAGGACAATGACTCGAGATGCAGATGTGAGAGGTAGTAGGAGAGGTACGCCAGACCAAAATCAGGATGCTGCCTTGGCCCTGAGGTTACAGAGGGAAGAGCTTATGGAGACTTTCCGAGAAACTCGAGTACAAACCAGAGACTCACTTTCCTATGCGAGAGCTAGTCTTAGAGCACTGGCTTCTAGGGCTGCCATTAACCTTCGCATTAATGGTCTCCGAGATTTGTAG 1176 45.92 MVQEGSTASASEPELETIRSKPLAIGNDGESFFSPRFKSVAAMAGWDEEALLIASLVVDDTPDREFRPKKRSVLHCKSPLSGSRRKRRASTNFISIPVAVLNLDEEQSTVEGDPKQDEETVEAEPKKIDSLVEQKVGASSSSVTCSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCKKCLRSSADKCGKKCPKCRQLTSNGRSCTVNTVLWNTIQLLFPQEVEARKEAKKGCGSHEKKKILDPEKAFYSSLQTRAIGTLSRHVSSSSSRRRGGVTVRDEDDESNSRTTQQAAFSNAESRVHSRMHHRSIRPVRTMTRDADVRGSRRGTPDQNQDAALALRLQREELMETFRETRVQTRDSLSYARASLRALASRAAINLRINGLRDL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29155521 29158102 + Sed0019906.1 Sed08g1458 723234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1458 391 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g1458 391 SUPERFAMILY RING/U-box 152 223 - -
Sed08g1458 391 MobiDBLite consensus disorder prediction 262 336 - -
Sed08g1458 391 ProSiteProfiles Zinc finger RING-type profile. 160 199 IPR001841 -
Sed08g1458 391 MobiDBLite consensus disorder prediction 315 331 - -
Sed08g1458 391 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Sed08g1458 391 PANTHER UNCHARACTERIZED 323 380 IPR051657 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0006302(PANTHER)|GO:0031491(PANTHER)|GO:0035861(PANTHER)
Sed08g1458 391 MobiDBLite consensus disorder prediction 108 125 - -
Sed08g1458 391 MobiDBLite consensus disorder prediction 105 125 - -
Sed08g1458 391 SMART ring_2 160 198 IPR001841 -
Sed08g1458 391 Pfam Zinc finger, C3HC4 type (RING finger) 160 198 IPR018957 GO:0046872(InterPro)
Sed08g1458 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 229 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1458 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0470 Sed-Chr6:4115240 Sed08g1458 Sed-Chr8:29155521 8.30E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010096 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33