Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1480 ATGCCGGAAGAAACCACTTCCATAGATTACGTCATGGAGGCCGCCGCCGGACCTCACTTCTCCGGCCTCCGACTCGACGGCCGCCTCTCCTCTCCACCTTCTTCCTCCACATCTTCTCCTGCGAACGCCGATCCCAACTCTCCCAAGCAGCCTTTCGTCATCGGTGTGTCTGGAGGTACTGCTTCTGGTAAGACGACTGTGTGTGATATGATTATCCAGCAACTCCATGATCATAGAGTTGTGCTGATCAATCAGGACTCGTTTTACCGTGGGTTGACTGCTGAAGAACTACAACGCGTGCACGAGTACAACTTTGATCATCCTGATTCTTTTGACACTGAGCAGCTTGTGGATTGCATCGAAAAGCTTAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTCAAGACTCATCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCCGATGTTATCATTGTGGAAGGTATTCTGGTTTTCCATGACCAAAGAGTCCGCAATCTAATGAATATGAAGATATTTGTTGACACAGATGCTGACGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTAGAAAGGGGCAGGGACATTAACTCCGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTTCCTTCAAAGAAGTATGCTGATGTGATCATACCACGTGGAGGTGATAACCATGTTGCGATTGATTTGATTGTGCAACACATCCATACAAAGCTAGGTCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAATCAACATTTCAGATTAGAGGCATGCATACACTAATTCGAGACCAGGATATTTCAAAGCACGATTTTGTGTTCTATTCAGATCGACTTATACGTCTGGTCGTGGAGCACGGCCTTGGACATTTTCCATTTACGGAAAAACAAGTGGTCACTCCAACGGCATCTGTCTACAGTGGGGTTGATTTCTGCAAAAAGCTATGTGGAGTTTCCATCGTTCGGAGTGGTGAAAGCATGGAAAACGCATTGCGTGCATGTTGCAAAGGAATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGCAGCAGCTGATATATGAGAAATTGCCCAAGGATATATCGGAGCGACATGTCCTACTCCTGGATCCTGTTCTCGCTACTGGTAACTCAGCTAATCAAGCAATTGATCTACTCATACAAAAGGGGGTTCCAGAATCGCACATCATATTTCTCAACTTGATCTCTGCCCCTGAGGGGATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCTGAGATCGACGATGGACTGAACGAAGAATATCGCGTCATACCCGGCATGGGTGAATTTGGCGATCGTTACTTCGGTACCGATGATTAG 1419 45.1 MPEETTSIDYVMEAAAGPHFSGLRLDGRLSSPPSSSTSSPANADPNSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLINQDSFYRGLTAEELQRVHEYNFDHPDSFDTEQLVDCIEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASDVIIVEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDQDISKHDFVFYSDRLIRLVVEHGLGHFPFTEKQVVTPTASVYSGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDDGLNEEYRVIPGMGEFGDRYFGTDD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29311681 29317796 + Sed0006933.1 Sed08g1480 723256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1480 472 PANTHER URIDINE KINASE 47 405 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Sed08g1480 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 244 IPR027417 -
Sed08g1480 472 SUPERFAMILY PRTase-like 254 471 IPR029057 -
Sed08g1480 472 Pfam Uracil phosphoribosyltransferase 269 470 - -
Sed08g1480 472 Pfam Phosphoribulokinase / Uridine kinase family 53 239 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Sed08g1480 472 NCBIfam uridine kinase 51 251 IPR000764 -
Sed08g1480 472 CDD PRTases_typeI 328 443 IPR000836 -
Sed08g1480 472 PRINTS Uridine kinase signature 126 141 - -
Sed08g1480 472 PRINTS Uridine kinase signature 197 208 - -
Sed08g1480 472 PRINTS Uridine kinase signature 81 92 - -
Sed08g1480 472 PRINTS Uridine kinase signature 183 193 - -
Sed08g1480 472 PRINTS Uridine kinase signature 51 68 - -
Sed08g1480 472 PRINTS Uridine kinase signature 219 232 - -
Sed08g1480 472 FunFam Uridine kinase 255 470 - -
Sed08g1480 472 MobiDBLite consensus disorder prediction 22 56 - -
Sed08g1480 472 MobiDBLite consensus disorder prediction 28 46 - -
Sed08g1480 472 Gene3D - 47 254 IPR027417 -
Sed08g1480 472 CDD UMPK 53 251 IPR000764 -
Sed08g1480 472 FunFam Uridine kinase 48 254 - -
Sed08g1480 472 Gene3D - 255 470 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1480 K00876 - - csv:101207261 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3616 Sed-Chr4:45394788 Sed08g1480 Sed-Chr8:29311681 7.20E-207 dispersed
Sed05g2667 Sed-Chr5:38127963 Sed08g1480 Sed-Chr8:29311681 2.80E-251 dispersed
Sed05g2668 Sed-Chr5:38127963 Sed08g1480 Sed-Chr8:29311681 3.60E-221 dispersed
Sed07g2767 Sed-Chr7:42707459 Sed08g1480 Sed-Chr8:29311681 1.40E-208 dispersed
Sed08g1480 Sed-Chr8:29311681 Sed14g0512 Sed-Chr14:5068582 6.00E-15 dispersed
Sed06g0448 Sed-Chr6:3955816 Sed08g1480 Sed-Chr8:29311681 2.90E-267 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1379 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed01g1380 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed03g1619 . 33 189 PRT Gene Family AT1G80050 78.3 9.6e-66 247.3
Sed05g0981 . 30 180 PRT Gene Family AT1G80050 76.2 2.9e-62 235.7
Sed01g4012 . 30 180 PRT Gene Family AT1G80050 76.8 1.4e-61 233.4
Sed04g0771 . 27 177 PRT Gene Family AT1G80050 74.8 2.5e-61 232.6
Sed10g1206 . 98 247 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed10g1207 . 54 203 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed01g4014 . 13 130 PRT Gene Family AT1G80050 77.1 7.7e-47 184.5
Sed01g4013 . 28 143 PRT Gene Family AT1G80050 77.6 2.9e-46 182.6
Sed03g1619 . 1 148 PRT Gene Family AT5G11160 81.1 3.2e-64 242.3
Sed01g1379 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g1380 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g4012 . 8 145 PRT Gene Family AT5G11160 76.1 6.1e-55 211.5
Sed05g0981 . 8 145 PRT Gene Family AT5G11160 74.6 1.0e-54 210.7
Sed10g1206 . 76 213 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed10g1207 . 32 169 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed04g0771 . 5 142 PRT Gene Family AT5G11160 71.7 4.8e-52 201.8
Sed10g1206 . 69 249 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed10g1207 . 25 205 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed05g0981 . 1 180 PRT Gene Family AT1G27450 71.7 7.9e-72 267.7
Sed01g4012 . 7 180 PRT Gene Family AT1G27450 74.7 6.7e-71 264.6
Sed04g0771 . 4 177 PRT Gene Family AT1G27450 71.8 1.3e-69 260.4
Sed03g1619 . 11 183 PRT Gene Family AT1G27450 68.8 3.8e-66 248.8
Sed01g1379 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g1380 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g4013 . 7 143 PRT Gene Family AT1G27450 57.5 2.7e-48 189.5
Sed01g4014 . 13 130 PRT Gene Family AT1G27450 75.4 1.1e-46 184.1
Sed01g0252 . 63 549 PRT Gene Family AT2G16570 84.0 3.2e-241 832.0
Sed05g3558 . 68 554 PRT Gene Family AT2G16570 82.6 1.4e-236 816.6
Sed09g0518 . 66 523 PRT Gene Family AT2G16570 76.9 2.2e-205 713.0
Sed01g0252 . 55 549 PRT Gene Family AT4G34740 83.7 7.6e-243 837.4
Sed05g3558 . 24 554 PRT Gene Family AT4G34740 78.4 4.0e-236 815.1
Sed09g0518 . 55 523 PRT Gene Family AT4G34740 76.8 1.8e-207 719.9
Sed05g3558 . 1 527 PRT Gene Family AT4G38880 67.9 7.1e-198 688.0
Sed01g0252 . 6 522 PRT Gene Family AT4G38880 67.4 3.9e-196 682.2
Sed09g0518 . 70 520 PRT Gene Family AT4G38880 70.2 1.1e-177 620.9
Sed10g1206 . 69 249 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed10g1207 . 25 205 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed05g0981 . 1 180 PRT Gene Family AT1G27450 71.7 7.9e-72 267.7
Sed01g4012 . 7 180 PRT Gene Family AT1G27450 74.7 6.7e-71 264.6
Sed04g0771 . 4 177 PRT Gene Family AT1G27450 71.8 1.3e-69 260.4
Sed03g1619 . 11 183 PRT Gene Family AT1G27450 68.8 3.8e-66 248.8
Sed01g1379 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g1380 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g4013 . 7 143 PRT Gene Family AT1G27450 57.5 2.7e-48 189.5
Sed01g4014 . 13 130 PRT Gene Family AT1G27450 75.4 1.1e-46 184.1
Sed01g1379 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed01g1380 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed03g1619 . 33 189 PRT Gene Family AT1G80050 78.3 9.6e-66 247.3
Sed05g0981 . 30 180 PRT Gene Family AT1G80050 76.2 2.9e-62 235.7
Sed01g4012 . 30 180 PRT Gene Family AT1G80050 76.8 1.4e-61 233.4
Sed04g0771 . 27 177 PRT Gene Family AT1G80050 74.8 2.5e-61 232.6
Sed10g1206 . 98 247 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed10g1207 . 54 203 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed01g4014 . 13 130 PRT Gene Family AT1G80050 77.1 7.7e-47 184.5
Sed01g4013 . 28 143 PRT Gene Family AT1G80050 77.6 2.9e-46 182.6
Sed05g0981 . 6 97 PRT Gene Family AT4G22570 84.8 2.0e-43 172.6
Sed01g4012 . 6 97 PRT Gene Family AT4G22570 85.9 4.4e-43 171.4
Sed04g0771 . 1 94 PRT Gene Family AT4G22570 82.7 8.4e-42 167.2
Sed10g1206 . 73 164 PRT Gene Family AT4G22570 82.6 1.3e-39 159.8
Sed10g1207 . 29 120 PRT Gene Family AT4G22570 82.6 1.3e-39 159.8
Sed03g1619 . 11 100 PRT Gene Family AT4G22570 78.9 3.6e-37 151.8
Sed05g0981 . 1 96 PRT Gene Family AT4G12440 80.2 5.5e-40 161.0
Sed01g4012 . 1 96 PRT Gene Family AT4G12440 82.3 5.5e-40 161.0
Sed04g0771 . 5 93 PRT Gene Family AT4G12440 84.3 3.0e-38 155.2
Sed10g1206 . 69 164 PRT Gene Family AT4G12440 79.2 1.9e-37 152.5
Sed10g1207 . 25 120 PRT Gene Family AT4G12440 79.2 1.9e-37 152.5
Sed03g1619 . 4 99 PRT Gene Family AT4G12440 78.1 5.7e-37 151.0
Sed03g1619 . 1 148 PRT Gene Family AT5G11160 81.1 3.2e-64 242.3
Sed01g1379 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g1380 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g4012 . 8 145 PRT Gene Family AT5G11160 76.1 6.1e-55 211.5
Sed05g0981 . 8 145 PRT Gene Family AT5G11160 74.6 1.0e-54 210.7
Sed10g1206 . 76 213 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed10g1207 . 32 169 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed04g0771 . 5 142 PRT Gene Family AT5G11160 71.7 4.8e-52 201.8
Sed11g1384 . 1 186 PRT Gene Family AT1G71750 65.5 1.4e-69 260.4
Sed11g1385 . 1 157 PRT Gene Family AT1G71750 65.2 2.5e-55 213.0
Sed07g2767 . 15 468 PRT Gene Family AT1G55810 84.6 2.9e-224 775.4
Sed04g3616 . 16 469 PRT Gene Family AT1G55810 84.2 1.2e-222 770.0
Sed08g1480 . 19 472 PRT Gene Family AT1G55810 76.3 1.8e-202 703.0
Sed05g2667 . 4 459 PRT Gene Family AT1G55810 75.1 6.8e-202 701.0
Sed06g0448 . 19 480 PRT Gene Family AT1G55810 74.7 1.5e-201 699.9
Sed05g2668 . 4 411 PRT Gene Family AT1G55810 74.8 7.6e-177 617.8
Sed07g2767 . 65 467 PRT Gene Family AT3G27440 77.2 2.4e-185 646.0
Sed04g3616 . 66 468 PRT Gene Family AT3G27440 76.7 1.3e-183 640.2
Sed08g1480 . 70 472 PRT Gene Family AT3G27440 75.2 5.2e-180 628.2
Sed06g0448 . 78 480 PRT Gene Family AT3G27440 74.2 9.9e-179 624.0
Sed05g2667 . 57 459 PRT Gene Family AT3G27440 73.9 1.1e-177 620.5
Sed05g2668 . 57 411 PRT Gene Family AT3G27440 74.1 1.7e-154 543.5
Sed06g0448 . 1 480 PRT Gene Family AT3G27190 86.7 1.4e-248 856.3
Sed08g1480 . 1 472 PRT Gene Family AT3G27190 85.1 1.1e-245 846.7
Sed05g2667 . 1 459 PRT Gene Family AT3G27190 82.8 1.6e-228 789.6
Sed07g2767 . 11 467 PRT Gene Family AT3G27190 76.2 4.7e-209 724.9
Sed04g3616 . 3 468 PRT Gene Family AT3G27190 73.9 1.2e-207 720.3
Sed05g2668 . 1 411 PRT Gene Family AT3G27190 82.3 8.1e-201 697.6
Sed14g0512 . 1 288 PRT Gene Family AT3G53900 68.0 2.2e-108 389.8
Sed14g0514 . 1 238 PRT Gene Family AT3G53900 64.3 3.0e-81 299.7
Sed14g0515 . 1 238 PRT Gene Family AT3G53900 64.3 3.0e-81 299.7
Sed14g0513 . 45 228 PRT Gene Family AT3G53900 72.3 5.3e-78 288.9
Sed07g2767 . 1 468 PRT Gene Family AT4G26510 83.6 3.0e-232 802.0
Sed04g3616 . 1 469 PRT Gene Family AT4G26510 83.7 1.9e-231 799.3
Sed08g1480 . 7 472 PRT Gene Family AT4G26510 77.3 3.3e-215 745.3
Sed06g0448 . 7 480 PRT Gene Family AT4G26510 75.9 1.2e-212 736.9
Sed05g2667 . 1 459 PRT Gene Family AT4G26510 75.7 3.5e-209 725.3
Sed05g2668 . 1 411 PRT Gene Family AT4G26510 74.8 2.8e-182 636.0
Sed06g0448 . 1 480 PRT Gene Family AT5G40870 87.2 3.6e-249 858.2
Sed08g1480 . 1 472 PRT Gene Family AT5G40870 86.1 3.4e-247 851.7
Sed05g2667 . 1 459 PRT Gene Family AT5G40870 83.7 4.0e-232 801.6
Sed07g2767 . 11 470 PRT Gene Family AT5G40870 73.6 3.4e-207 718.8
Sed04g3616 . 3 470 PRT Gene Family AT5G40870 72.3 6.5e-206 714.5
Sed05g2668 . 1 411 PRT Gene Family AT5G40870 83.5 7.1e-205 711.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61