Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g1486 | ATGGATATCATAATCTCCCTCTTCCCCATCTTCATTTTCATCTTCCTCCTCTTCAAATTCCGGCCACCCGCCACCACGTTCCCCGGCCAATCTTCGCCGCCGACCTACCCTCTCATCGGCTGCCTTCTCTCCTTCTACAACAACCGCAACCGCCTGTTGGATTGGTACACCGAGCTCTTGTCGGACTCCGACACCGGCACCATCGTCATCAGCCGCCTCGGCTGCCGGAGGACGGTGGTCACAGCAAACCCGCTTAACGTTGAGTACATTTTGACGACCCATTTCGTTAATTTCCCTAAAGGGAAGCCTTTCACTGAGATCTTGGGCGACTTTCTTGGCTATGGCATTTTCAACGTTGACGGCGAGCTATGGCAGACGCAGCGGAAGCTGGCTAGCCATGAGTTTACCGCCAACTCCCTTCGAGAATTCGTGGTTAAGACGTTGGCGTCTGAAGTCGAGAACCGATTGTTGCCTGCTATAGAAAGATCAGTGCGAGATAATAGAATGGTAGATTTGCAGGAGTTACTACGAGGATTTGCATTCAGTGTAATATGCAAGGTTGTATTAGGTAGTGAAGAAGAGGCCATTTCGGGGCTCGAGAAGAGCTTCGACGTAGCGTCGGAGGTGAGCGCTGGACGGGCAAAGGAGCCGGTTTACATGATGTGGAAGATGAAGAGGTGGTTCGGCGTCGGATCCGAGCGGCTGCTGAAGATGTCGGTTGCGGAGGTTCATAGGAAGGTGATGAACATAATTGACAAGAAAAGGAAGAAGAAGATCCAGAGTTTCCATGACAGCCAAGATCTCTTGTCCAGGTTGATCAGTGTCGGTTATGATGATGAGGTGATACGAGACATGGCTATAAGCTTCATCATGGCGGGGCGAGACACGACATCGGCCGCTATGACATGGCTCTTTTGGCTACTCTCCCATCATCCCGACATCGAGAATCGATTGATAGAAGAAATAGACTTCGAAACAACACTAACATTTCACAAGAAATTCAATTACAAATCTCTCAAGGAGCTCACATTTCTCAAGGCATTCCCTTGGGACTCCAAGCACGCCATTGTTGACGACTACTTACCCGACGGTACTCCAGTCCAAGCCGGAGATAGAGTGACGTATTTCCCGTACGGAATGGGGAGAATGGAAGCTCTTTGGGGGAAGGACCGCTTCGAGTTCAAGCCGAGCCGATGGCTGCTCGAACCAGACAGCCATGGCCAGAAAGGTGAGGTGAAGCTGGTTAGTCCATACAAGTTTCCAATTTTTCAGGCGGGGCCAAGGGTGTGTTTGGGAAAAGAGATGGCTTTCATTCAAATGAAGTATGTTGTAGCCTCAATTCTCAGCCACTTTAGAATCAAACCCATCGCCGCCGACCAACCTGTGTTCGTCCCGCTGTTGACGGCGCACATGGTCGGCGGCTTAAAGGTTCTGTTTCAGAGGAGAGAGCCTCAAAACAAGCAAAATTCCCAATTTAAACAATCAGAAGAGTCAAAGTCAACTATGTCAACACTGAACTGA | 1521 | 49.97 | MDIIISLFPIFIFIFLLFKFRPPATTFPGQSSPPTYPLIGCLLSFYNNRNRLLDWYTELLSDSDTGTIVISRLGCRRTVVTANPLNVEYILTTHFVNFPKGKPFTEILGDFLGYGIFNVDGELWQTQRKLASHEFTANSLREFVVKTLASEVENRLLPAIERSVRDNRMVDLQELLRGFAFSVICKVVLGSEEEAISGLEKSFDVASEVSAGRAKEPVYMMWKMKRWFGVGSERLLKMSVAEVHRKVMNIIDKKRKKKIQSFHDSQDLLSRLISVGYDDEVIRDMAISFIMAGRDTTSAAMTWLFWLLSHHPDIENRLIEEIDFETTLTFHKKFNYKSLKELTFLKAFPWDSKHAIVDDYLPDGTPVQAGDRVTYFPYGMGRMEALWGKDRFEFKPSRWLLEPDSHGQKGEVKLVSPYKFPIFQAGPRVCLGKEMAFIQMKYVVASILSHFRIKPIAADQPVFVPLLTAHMVGGLKVLFQRREPQNKQNSQFKQSEESKSTMSTLN | 506 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29356077 | 29360047 | - | Sed0019708.1 | Sed08g1486 | 723262 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g1486 | 506 | SUPERFAMILY | Cytochrome P450 | 32 | 482 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | E-class P450 group I signature | 301 | 327 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | E-class P450 group I signature | 430 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | E-class P450 group I signature | 420 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | E-class P450 group I signature | 281 | 298 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | E-class P450 group I signature | 179 | 197 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | CDD | CYP86A | 67 | 475 | - | - | |
| Sed08g1486 | 506 | Gene3D | Cytochrome P450 | 25 | 493 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | MobiDBLite | consensus disorder prediction | 483 | 506 | - | - | |
| Sed08g1486 | 506 | Pfam | Cytochrome P450 | 32 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PANTHER | CYTOCHROME P450 | 17 | 475 | - | - | |
| Sed08g1486 | 506 | PRINTS | P450 superfamily signature | 430 | 441 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | P450 superfamily signature | 421 | 430 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g1486 | 506 | PRINTS | P450 superfamily signature | 292 | 309 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0036 | Sed-Chr8:169980 | Sed08g1486 | Sed-Chr8:29356077 | 2.00E-154 | dispersed | |
| Sed08g1486 | Sed-Chr8:29356077 | Sed09g0050 | Sed-Chr9:409158 | 5.70E-72 | dispersed | |
| Sed08g1486 | Sed-Chr8:29356077 | Sed12g2502 | Sed-Chr12:34536214 | 1.20E-154 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g1486 | K20665 | - | csv:101207598 | 728.398 |