Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1495 ATGGATTGGGGTTTGGCCAAAACCAGTTTGGGGGAAAACAAACAAAACCCCACAAATTTTTCAGACTCGATTGGGTCAAACAATGAAGAACAAATCCTCAAGGGTTCGAGCCAGGAAAGCTCATCCTCTCATGGATCTTCCAAACGGACTCGATTGCTCCATGGAACCCAAAACCAGACGTGTTTGGTTGATGGCTGTGACTCTGACTTGAGCAGTTGCAAGGACTATCATCGTCGCCATAGGGTCTGTGATTTGCACTCCAAAACCCCTGTTGTTTTGGTCAGAGGAGAGGAGAAACGATTCTGCCAACAGTGTAGCAGATTTCATTCTCTGGGTGAGTTTGATGAAGTTAAGAGAAGTTGTAGGAAGAGGCTTGATGGGCATAATCGCCGTAGGAGGAAGCCTCAGCCTGATTCTTTGTTTATGAGTTCAAGGGATTTTCTGTCTAATTGCAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATGTGCCTAATGAACTTGGTAGGAGTTTATGGCCTGTGAAAACTGAAGTGAAATCATCTATGGTTCCACCAAATTCCTCTGGTTATTACAGCTATGAATCAGGAGTTGGAGAAAACAAACACTTGCCATTTTTCCTGCATAAGAATGGCACAAAGCAAGAAAAACAAATGGACTCTTCTCAGTTGTGTTTCGATCAGCATCTTCCTGATTCGATCTCTCGGGGAATTGAGGTGGGCAGCCAGAAAACGGCGCCGACCAATATTTTGCCCGAGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCTCACCCCATGCAAGCCCTCCCAGATGCTGGCTTCAGCTCTTTGGGCCAGTCCCATCTGAGTCTTCCAGTGCAAACTCAAGAGGAAACTGAGCTGCATTTCAGTAGTCTAAGTGGCTTCTCTAGCAGCTCTTTTGGCTCCTAG 939 45.79 MDWGLAKTSLGENKQNPTNFSDSIGSNNEEQILKGSSQESSSSHGSSKRTRLLHGTQNQTCLVDGCDSDLSSCKDYHRRHRVCDLHSKTPVVLVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPDSLFMSSRDFLSNCKGPIVLQFSDQQIHVPNELGRSLWPVKTEVKSSMVPPNSSGYYSYESGVGENKHLPFFLHKNGTKQEKQMDSSQLCFDQHLPDSISRGIEVGSQKTAPTNILPEDSGCALYLLSSHPMQALPDAGFSSLGQSHLSLPVQTQEETELHFSSLSGFSSSSFGS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29441337 29443530 - Sed0019106.1 Sed08g1495 723271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1495 312 ProSiteProfiles Zinc finger SBP-type profile. 58 135 IPR004333 GO:0003677(InterPro)
Sed08g1495 312 Gene3D - 53 122 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed08g1495 312 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 293 IPR044817 GO:0003677(InterPro)
Sed08g1495 312 MobiDBLite consensus disorder prediction 9 51 - -
Sed08g1495 312 Pfam SBP domain 61 134 IPR004333 GO:0003677(InterPro)
Sed08g1495 312 FunFam Squamosa promoter-binding-like protein 14 53 122 - -
Sed08g1495 312 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed08g1495 312 MobiDBLite consensus disorder prediction 1 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1495 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1495 Sed-Chr8:29441337 Sed09g0380 Sed-Chr9:3429148 7.40E-38 dispersed
Sed06g0438 Sed-Chr6:3860872 Sed08g1495 Sed-Chr8:29441337 3.00E-117 wgd
Sed07g0093 Sed-Chr7:945144 Sed08g1495 Sed-Chr8:29441337 1.30E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1273 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00193 Cam06g0016 Cec06g0214 Cco06g0208 Clacu06g0211 Cmu06g0204 Cre06g0977 . . . . . . Chy11g01795 Cme11g02326 . . . . . . . . Sed08g1495 . . . . . . Cpe17g01068 . Bhi12g02448 Tan06g1510 Cmetu11g0895 . Hepe03g1119 . . . . . . . . . Lsi09g01730 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39352 PF03110 SBP 4.10E-30 No_clan Sed TF