Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1496 | ATGGACAGCTACCAGATGTTTTTCCCTTGCTCCGGTGACCGCGGGGGCCTCTCGGCTTATCACCACCCCGACATGTCGTCCGGGGCCGGATCCGACATGTTCGGGGGGTTTCACGCCGCTGAATTGGAGGGCGGAAGCGGGTTCTTGGAGCTGAAGGCGGAGGCCGATGCCGCCGCGATGGCCGAACCCGACGGCGGAAGAAAGAAAGGGGAGAAGAAGGTGAGGAAACCTAGATATGCTTTTCAGACAAGGAGCCAAGTTGATATTCTTGACGATGGATATCGTTGGAGGAAATATGGTCAAAAGGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGGTGCACACATCAAGGGTGCAATGTGAAGAAACAAGTACAAAGGCTAACAGGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATTCACACACACTCCATTGATAAGCCAACAGACAACTTTGAGCAAATCTTAAGTAGAATGCAAATTTACACTAATCCTTTTTGA | 513 | 49.71 | MDSYQMFFPCSGDRGGLSAYHHPDMSSGAGSDMFGGFHAAELEGGSGFLELKAEADAAAMAEPDGGRKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTGDEGVVVTTYEGIHTHSIDKPTDNFEQILSRMQIYTNPF | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29461552 | 29464967 | - | Sed0025398.1 | Sed08g1496 | 723272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1496 | 170 | SMART | WRKY_cls | 90 | 149 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g1496 | 170 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 62 | 150 | IPR044810 | GO:0003700(InterPro) | |
Sed08g1496 | 170 | FunFam | WRKY transcription factor 57 | 76 | 150 | - | - | |
Sed08g1496 | 170 | ProSiteProfiles | WRKY domain profile. | 85 | 150 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g1496 | 170 | Gene3D | WRKY domain | 75 | 150 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g1496 | 170 | SUPERFAMILY | WRKY DNA-binding domain | 82 | 149 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g1496 | 170 | Pfam | WRKY DNA -binding domain | 91 | 147 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1496 | Sed-Chr8:29461552 | Sed12g0617 | Sed-Chr12:3657534 | 4.30E-40 | dispersed | |
Sed08g1496 | Sed-Chr8:29461552 | Sed02g1004 | Sed-Chr2:47431827 | 9.00E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39353 | PF03106 | WRKY | 4.50E-26 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1496 | - | - | - | 0.0 |