Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1496 ATGGACAGCTACCAGATGTTTTTCCCTTGCTCCGGTGACCGCGGGGGCCTCTCGGCTTATCACCACCCCGACATGTCGTCCGGGGCCGGATCCGACATGTTCGGGGGGTTTCACGCCGCTGAATTGGAGGGCGGAAGCGGGTTCTTGGAGCTGAAGGCGGAGGCCGATGCCGCCGCGATGGCCGAACCCGACGGCGGAAGAAAGAAAGGGGAGAAGAAGGTGAGGAAACCTAGATATGCTTTTCAGACAAGGAGCCAAGTTGATATTCTTGACGATGGATATCGTTGGAGGAAATATGGTCAAAAGGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGGTGCACACATCAAGGGTGCAATGTGAAGAAACAAGTACAAAGGCTAACAGGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATTCACACACACTCCATTGATAAGCCAACAGACAACTTTGAGCAAATCTTAAGTAGAATGCAAATTTACACTAATCCTTTTTGA 513 49.71 MDSYQMFFPCSGDRGGLSAYHHPDMSSGAGSDMFGGFHAAELEGGSGFLELKAEADAAAMAEPDGGRKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTGDEGVVVTTYEGIHTHSIDKPTDNFEQILSRMQIYTNPF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29461552 29464967 - Sed0025398.1 Sed08g1496 723272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1496 170 SMART WRKY_cls 90 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g1496 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 150 IPR044810 GO:0003700(InterPro)
Sed08g1496 170 FunFam WRKY transcription factor 57 76 150 - -
Sed08g1496 170 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g1496 170 Gene3D WRKY domain 75 150 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g1496 170 SUPERFAMILY WRKY DNA-binding domain 82 149 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g1496 170 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1496 Sed-Chr8:29461552 Sed12g0617 Sed-Chr12:3657534 4.30E-40 dispersed
Sed08g1496 Sed-Chr8:29461552 Sed02g1004 Sed-Chr2:47431827 9.00E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39353 PF03106 WRKY 4.50E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1496 - - - 0.0