Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1502 ATGGATCCTAAAACCTCATCAACAACAAGAAGAAGAACAAAGCAGCAGCCCCAAGAAGTAGAACCCAACTTTTCAAACTTCCCTCAACAAGAACAAGAACAAGAACAAGAACAAGAATCAAACATGAATGAGAACAAAGCAAGTGAAATCAAGGATTTCCAAATCGCAATTGCAGATAAAGAAGAGGGCAAGAAACAGTTAGCCCCAAAACGAAGCTCCAACAAAGATCGCCACACAAAAGTGGAAGGCCGTGGCCGGAGAATCCGTATGCCGGCTCTTTGCGCCGCCAGAATCTTTCAACTCACCAGAGAATTGGGTCACAAATCCGACGGCGAAACCATCCAGTGGCTCCTTCAGCAAGCCGAGCCGTCGATTATCGCCGCCACCGGCACCGGAACCATCCCCGCCTCTGCCCTAGCCGCCGCGGCCGGCTCCGTTTCTCCACAAGGGGTTTCTATTTCCGCCGGATTGCACCAGAAATTGGAGGAATTAGGCGGCGGCGGGGGGTCCAGTAGGGCCAATTGGGGCAATTTAGGGCGACCCCATTTGGGTGTTAACCCCACCCAGCTTTGGCCCTCCTCGGTTCCTGGCTTTGGATTTCACTCTTCAACTGTCTCTGCCACTTCTAATTTAGCGAATGAAACTTCTAATTACTTTCACAAACTTGGGTTTCCACCTTTTGATTTATCATCCCCTTCCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGGGGAAACACTCAGCACTTGCCTGGTTTAGAGCTTGGATTGTCTCAAGATCCCCATATTGGGGCTATCCATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAAGCTAGAGTTCATCACCAGGATCAACCTCCTTCTAAGGATGATTCTCAGGATTCAGGCTAG 903 49.17 MDPKTSSTTRRRTKQQPQEVEPNFSNFPQQEQEQEQEQESNMNENKASEIKDFQIAIADKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSPQGVSISAGLHQKLEELGGGGGSSRANWGNLGRPHLGVNPTQLWPSSVPGFGFHSSTVSATSNLANETSNYFHKLGFPPFDLSSPSNMGPMSFTSILGGNTQHLPGLELGLSQDPHIGAIHPQALNQIYQQMGQARVHHQDQPPSKDDSQDSG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29579047 29581224 + Sed0020156.1 Sed08g1502 723278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1502 300 MobiDBLite consensus disorder prediction 1 85 - -
Sed08g1502 300 MobiDBLite consensus disorder prediction 18 36 - -
Sed08g1502 300 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 280 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed08g1502 300 MobiDBLite consensus disorder prediction 53 85 - -
Sed08g1502 300 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Sed08g1502 300 MobiDBLite consensus disorder prediction 1 17 - -
Sed08g1502 300 MobiDBLite consensus disorder prediction 279 300 - -
Sed08g1502 300 Pfam TCP family transcription factor 73 148 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2028 Sed-Chr3:14186249 Sed08g1502 Sed-Chr8:29579047 4.10E-27 dispersed
Sed08g0209 Sed-Chr8:1194138 Sed08g1502 Sed-Chr8:29579047 7.00E-30 dispersed
Sed08g1502 Sed-Chr8:29579047 Sed09g0363 Sed-Chr9:3297146 9.00E-33 dispersed
Sed06g0434 Sed-Chr6:3815520 Sed08g1502 Sed-Chr8:29579047 3.90E-112 wgd
Sed07g0108 Sed-Chr7:1018315 Sed08g1502 Sed-Chr8:29579047 1.70E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39354 PF03634 TCP 1.50E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1502 - - - 0.0