Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1502 ATGGATCCTAAAACCTCATCAACAACAAGAAGAAGAACAAAGCAGCAGCCCCAAGAAGTAGAACCCAACTTTTCAAACTTCCCTCAACAAGAACAAGAACAAGAACAAGAACAAGAATCAAACATGAATGAGAACAAAGCAAGTGAAATCAAGGATTTCCAAATCGCAATTGCAGATAAAGAAGAGGGCAAGAAACAGTTAGCCCCAAAACGAAGCTCCAACAAAGATCGCCACACAAAAGTGGAAGGCCGTGGCCGGAGAATCCGTATGCCGGCTCTTTGCGCCGCCAGAATCTTTCAACTCACCAGAGAATTGGGTCACAAATCCGACGGCGAAACCATCCAGTGGCTCCTTCAGCAAGCCGAGCCGTCGATTATCGCCGCCACCGGCACCGGAACCATCCCCGCCTCTGCCCTAGCCGCCGCGGCCGGCTCCGTTTCTCCACAAGGGGTTTCTATTTCCGCCGGATTGCACCAGAAATTGGAGGAATTAGGCGGCGGCGGGGGGTCCAGTAGGGCCAATTGGGGCAATTTAGGGCGACCCCATTTGGGTGTTAACCCCACCCAGCTTTGGCCCTCCTCGGTTCCTGGCTTTGGATTTCACTCTTCAACTGTCTCTGCCACTTCTAATTTAGCGAATGAAACTTCTAATTACTTTCACAAACTTGGGTTTCCACCTTTTGATTTATCATCCCCTTCCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGGGGAAACACTCAGCACTTGCCTGGTTTAGAGCTTGGATTGTCTCAAGATCCCCATATTGGGGCTATCCATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAAGCTAGAGTTCATCACCAGGATCAACCTCCTTCTAAGGATGATTCTCAGGATTCAGGCTAG 903 49.17 MDPKTSSTTRRRTKQQPQEVEPNFSNFPQQEQEQEQEQESNMNENKASEIKDFQIAIADKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSPQGVSISAGLHQKLEELGGGGGSSRANWGNLGRPHLGVNPTQLWPSSVPGFGFHSSTVSATSNLANETSNYFHKLGFPPFDLSSPSNMGPMSFTSILGGNTQHLPGLELGLSQDPHIGAIHPQALNQIYQQMGQARVHHQDQPPSKDDSQDSG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29579047 29581224 + Sed0020156.1 Sed08g1502 723278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1502 300 MobiDBLite consensus disorder prediction 1 85 - -
Sed08g1502 300 MobiDBLite consensus disorder prediction 18 36 - -
Sed08g1502 300 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 280 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed08g1502 300 MobiDBLite consensus disorder prediction 53 85 - -
Sed08g1502 300 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Sed08g1502 300 MobiDBLite consensus disorder prediction 1 17 - -
Sed08g1502 300 MobiDBLite consensus disorder prediction 279 300 - -
Sed08g1502 300 Pfam TCP family transcription factor 73 148 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1502 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2028 Sed-Chr3:14186249 Sed08g1502 Sed-Chr8:29579047 4.10E-27 dispersed
Sed08g0209 Sed-Chr8:1194138 Sed08g1502 Sed-Chr8:29579047 7.00E-30 dispersed
Sed08g1502 Sed-Chr8:29579047 Sed09g0363 Sed-Chr9:3297146 9.00E-33 dispersed
Sed06g0434 Sed-Chr6:3815520 Sed08g1502 Sed-Chr8:29579047 3.90E-112 wgd
Sed07g0108 Sed-Chr7:1018315 Sed08g1502 Sed-Chr8:29579047 1.70E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39354 PF03634 TCP 1.50E-30 No_clan Sed TF