Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g1522 | ATGAATGACGCCGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAGGAGGCTGAGGAGAAGGCCAACGAGATCTCCGTCTCCGCTGAAGAAGAATTCAATATTGAGAAGCTGCAGCTGGTTGAGGCGGAGAAGAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTCGAAATTCGGAAGAAGATTGAGTACTCCATGCAGCTCAATGCTTCTCGGATCAAAGTTCTGCAAGCACAGGATGATGTAGTTAACTCTATGAAAGACGCAGCATCGAAGGAGCTTCTGAATATAAGCGGAAACGAACGTGTGTACAAAAATCTTCTGAAGGATCTCATTGTGCAGAGCTTGCTTCGACTGAAAGAGCCTGCTGTTTTATTGCGATGCCGCAAAAGTGATCTCCATTTGGTGGAGTCTGTGCTGGGTTCAGCAGCCTATGAATATGCAGAGAAAGCAAAAGTTCATGAACCAGAGATCATTGTTGACCATGTCCATCTTCCACCTGGTCCAAGCCATCACCATCATCACGGTCTTTTTTGCTCTGGAGGCGTAGTATTGGCATCTCGAGATGGAAAGATTGTCTGTGAGAACACCCTTGATGCTAGGTTGGATGTTGTGTTCCGTAAAAAGCTTCCAGAGATCCGAAAAAGCCTTTTCAGCCAAGTTGCTGCATGA | 690 | 46.67 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNSMKDAASKELLNISGNERVYKNLLKDLIVQSLLRLKEPAVLLRCRKSDLHLVESVLGSAAYEYAEKAKVHEPEIIVDHVHLPPGPSHHHHHGLFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29702533 | 29707056 | - | Sed0024208.1 | Sed08g1522 | 723298 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g1522 | 229 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 224 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Sed08g1522 | 229 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 225 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Sed08g1522 | 229 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 226 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro) | |
| Sed08g1522 | 229 | Gene3D | - | 1 | 62 | - | - | |
| Sed08g1522 | 229 | Gene3D | - | 92 | 228 | IPR038495 | - | |
| Sed08g1522 | 229 | Coils | Coil | 38 | 61 | - | - | |
| Sed08g1522 | 229 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 224 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g1522 | Sed-Chr8:29702533 | Sed08g1524 | Sed-Chr8:29702533 | 3.80E-116 | dispersed | |
| Sed08g1522 | Sed-Chr8:29702533 | Sed08g1523 | Sed-Chr8:29702533 | 3.80E-116 | tandem | |
| Sed06g0421 | Sed-Chr6:3720826 | Sed08g1522 | Sed-Chr8:29702533 | 5.90E-109 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g1522 | K02150 | - | csv:101217221 | 387.111 |