Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1540 ATGGCCATCACAGAATCTCACAGTTCATCTCTGATCCCTAATTTCCTCTACTCGTCCAATTCTTCCATGGCCATTCCATTCCAGAGGATGCTTTCCTCTAATGATCTTTCCGGATCTCCGTCACCATCTCCGAGGAAGGCCTTTGCGATTCCGTCTCCGAGTGAATCGAGGATGAAACTGGAGATGTATTCGCCGGCTTTCTACGCCGCTTGTGCCGTCGGTGGAAGCCTCTCCTGTGGCCCCACTCACATGGCCGTCACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCAAATGAAATACAAGAGCATTTCATCTGGTTTTGGAGTGCTCCTAAAGGAGCAAGGAATGAGGGGCCTCTTTCGGGGTTGGGCGCCAACTCTACTAGGCTACAGTGCTCAGGGTGCTTGCAAGTATGGAATCTATGAATACTTTAAGAAATACTATTCTGATATAGCTGGTCCAGAGTATGCTGCAAAGTACAAGACCTTGATCTACCTTGCTGGCTCTGCATCTGCTGAAGTGATTGCGGATGTTGCACTTTGCCCCTTCGAAGCTGTTAAAGTTAGAGTTCAAACTCAGCCAGGTTTTGCAAGAGGTCTGTCTGACGGCCTCCCCAAGTTCGTCCGATCCGAAGGTGCCCTCGGGTTGTATAAGGGTATTGTTCCTCTATGGGGGCGTCAGATCCCATATACAATGATGAAATTTGCAACATTTGAGAATCTAGTGGAGCTCATATACAAGCATGTAATTCCGAAGCCAAAGAACGAATGCAGCAGCGCCTTGCAGCTCGGCGTCAGCTTTACTGGTGGATATATTGCAGGTGTTTCTTGTGCTATAGTTTCTCACCCTGCTGATAATCTGGTCTCTTTTCTCAATAATGCTAAAGGGGCTACCATTGGTGACGCGGTTAAGAAGCTTGGAGTTTGGGGTCTTTTCACAAGAGGGTTGCCTCTACGAATCGTCATGGTGGGAACTCTCACGGGAGCTCAGTGGGTTATCTACGATGCATTCAAAGTTTTTGTTGGATTGCCAACTACAGGTGGGGTTACTCCTACCACCACCAAACTTCCAAGTGGACTGAATGTTGAATGA 1101 47.87 MAITESHSSSLIPNFLYSSNSSMAIPFQRMLSSNDLSGSPSPSPRKAFAIPSPSESRMKLEMYSPAFYAACAVGGSLSCGPTHMAVTPLDLVKCNMQIDQMKYKSISSGFGVLLKEQGMRGLFRGWAPTLLGYSAQGACKYGIYEYFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNECSSALQLGVSFTGGYIAGVSCAIVSHPADNLVSFLNNAKGATIGDAVKKLGVWGLFTRGLPLRIVMVGTLTGAQWVIYDAFKVFVGLPTTGGVTPTTTKLPSGLNVE 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30270133 30274926 - Sed0001999.1 Sed08g1540 723316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1540 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 66 150 IPR018108 -
Sed08g1540 366 Gene3D Mitochondrial carrier domain 67 344 IPR023395 -
Sed08g1540 366 FunFam Phosphate carrier protein, mitochondrial 66 344 - -
Sed08g1540 366 Pfam Mitochondrial carrier protein 164 251 IPR018108 -
Sed08g1540 366 Pfam Mitochondrial carrier protein 68 153 IPR018108 -
Sed08g1540 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 163 247 IPR018108 -
Sed08g1540 366 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 52 353 IPR044677 GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Sed08g1540 366 SUPERFAMILY Mitochondrial carrier 68 339 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0981 Sed-Chr3:6075427 Sed08g1540 Sed-Chr8:30270133 1.00E-155 dispersed
Sed05g2146 Sed-Chr5:34471776 Sed08g1540 Sed-Chr8:30270133 3.50E-88 dispersed
Sed05g2147 Sed-Chr5:34471776 Sed08g1540 Sed-Chr8:30270133 3.50E-88 dispersed
Sed08g1540 Sed-Chr8:30270133 Sed11g1566 Sed-Chr11:31211942 6.40E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1540 K15102 - csv:101203018 595.89