Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1540 | ATGGCCATCACAGAATCTCACAGTTCATCTCTGATCCCTAATTTCCTCTACTCGTCCAATTCTTCCATGGCCATTCCATTCCAGAGGATGCTTTCCTCTAATGATCTTTCCGGATCTCCGTCACCATCTCCGAGGAAGGCCTTTGCGATTCCGTCTCCGAGTGAATCGAGGATGAAACTGGAGATGTATTCGCCGGCTTTCTACGCCGCTTGTGCCGTCGGTGGAAGCCTCTCCTGTGGCCCCACTCACATGGCCGTCACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCAAATGAAATACAAGAGCATTTCATCTGGTTTTGGAGTGCTCCTAAAGGAGCAAGGAATGAGGGGCCTCTTTCGGGGTTGGGCGCCAACTCTACTAGGCTACAGTGCTCAGGGTGCTTGCAAGTATGGAATCTATGAATACTTTAAGAAATACTATTCTGATATAGCTGGTCCAGAGTATGCTGCAAAGTACAAGACCTTGATCTACCTTGCTGGCTCTGCATCTGCTGAAGTGATTGCGGATGTTGCACTTTGCCCCTTCGAAGCTGTTAAAGTTAGAGTTCAAACTCAGCCAGGTTTTGCAAGAGGTCTGTCTGACGGCCTCCCCAAGTTCGTCCGATCCGAAGGTGCCCTCGGGTTGTATAAGGGTATTGTTCCTCTATGGGGGCGTCAGATCCCATATACAATGATGAAATTTGCAACATTTGAGAATCTAGTGGAGCTCATATACAAGCATGTAATTCCGAAGCCAAAGAACGAATGCAGCAGCGCCTTGCAGCTCGGCGTCAGCTTTACTGGTGGATATATTGCAGGTGTTTCTTGTGCTATAGTTTCTCACCCTGCTGATAATCTGGTCTCTTTTCTCAATAATGCTAAAGGGGCTACCATTGGTGACGCGGTTAAGAAGCTTGGAGTTTGGGGTCTTTTCACAAGAGGGTTGCCTCTACGAATCGTCATGGTGGGAACTCTCACGGGAGCTCAGTGGGTTATCTACGATGCATTCAAAGTTTTTGTTGGATTGCCAACTACAGGTGGGGTTACTCCTACCACCACCAAACTTCCAAGTGGACTGAATGTTGAATGA | 1101 | 47.87 | MAITESHSSSLIPNFLYSSNSSMAIPFQRMLSSNDLSGSPSPSPRKAFAIPSPSESRMKLEMYSPAFYAACAVGGSLSCGPTHMAVTPLDLVKCNMQIDQMKYKSISSGFGVLLKEQGMRGLFRGWAPTLLGYSAQGACKYGIYEYFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNECSSALQLGVSFTGGYIAGVSCAIVSHPADNLVSFLNNAKGATIGDAVKKLGVWGLFTRGLPLRIVMVGTLTGAQWVIYDAFKVFVGLPTTGGVTPTTTKLPSGLNVE | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 30270133 | 30274926 | - | Sed0001999.1 | Sed08g1540 | 723316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1540 | 366 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 66 | 150 | IPR018108 | - | |
Sed08g1540 | 366 | Gene3D | Mitochondrial carrier domain | 67 | 344 | IPR023395 | - | |
Sed08g1540 | 366 | FunFam | Phosphate carrier protein, mitochondrial | 66 | 344 | - | - | |
Sed08g1540 | 366 | Pfam | Mitochondrial carrier protein | 164 | 251 | IPR018108 | - | |
Sed08g1540 | 366 | Pfam | Mitochondrial carrier protein | 68 | 153 | IPR018108 | - | |
Sed08g1540 | 366 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 163 | 247 | IPR018108 | - | |
Sed08g1540 | 366 | PANTHER | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED | 52 | 353 | IPR044677 | GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro) | |
Sed08g1540 | 366 | SUPERFAMILY | Mitochondrial carrier | 68 | 339 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0981 | Sed-Chr3:6075427 | Sed08g1540 | Sed-Chr8:30270133 | 1.00E-155 | dispersed | |
Sed05g2146 | Sed-Chr5:34471776 | Sed08g1540 | Sed-Chr8:30270133 | 3.50E-88 | dispersed | |
Sed05g2147 | Sed-Chr5:34471776 | Sed08g1540 | Sed-Chr8:30270133 | 3.50E-88 | dispersed | |
Sed08g1540 | Sed-Chr8:30270133 | Sed11g1566 | Sed-Chr11:31211942 | 6.40E-158 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1540 | K15102 | - | csv:101203018 | 595.89 |