Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1554 ATGTGTGTGACCGATGCTGAGCAGGTTTCCACTGAAATGTCGAATTCTGGGGTTAATAATAATAATAATAATTCCAAGCCATGGCCTATGCATTGTGAATTTTTGGAGAATCAGATGGGAAATACTCATATGGAGCCTCTTCTTACTGGACCTAGCCACCAAATCCCTTCTGGGAACAATTTTCCTCTTGAAAGCATTTCTGAGGATGCTGCAGTCACTGACAGGAAAGAGAATCTATCTACTTTTGTTCCTGCACTTAGATCAGGAGAATGGTCTGATATCGGAAAGCGTCCGTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCGGTAGTTTTCTCAATGAGGAAGCTGTCTCTTTCTACGGTGTATTTGATGGTCATGGAGGAAAAGACGCTGCACAATTTGTTCGTGATCACTTGCCGAGAGTCATTGTCGAAGATTCCCACTTTCCTTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAGACATCTCTATCTTCTGGCACAACTGCACTTACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCAGTATTATCAAGGCAGTGCTGTGCAATAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAACGGAAGCGAATCGAGGCCTTGGGTGGATTCATTGACGACGATTATCTAAATGGCATGCTCGGGGTGACACGTGCAATAGGTGATTGGCATCTTGAAGGAATGAAGGAAATGAGCGAAAGAGGTGGACCGTTGAGTGCTGAACCTGAACTTCGATTAATGACACTGACGAAGGAGGACGATTTCTTGATCATAGGTAGCGATGGAATATGGGACGTGTTCACAAGTCAAAACGCTGTCGACTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTAAAAATGTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCAACAGACAATTTGACAGTGGTCTTGGTTAGCTTTCACATGGAACCACCTCCTCCTGTAGTTTTTCAGAGGCCAAAATTTAGAAGAAGCATTTCAGCAGAGGGGCTTCAAAACCTCAAATTTCTGCTAGAAGGATAG 1158 44.04 MCVTDAEQVSTEMSNSGVNNNNNNSKPWPMHCEFLENQMGNTHMEPLLTGPSHQIPSGNNFPLESISEDAAVTDRKENLSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGGSFLNEEAVSFYGVFDGHGGKDAAQFVRDHLPRVIVEDSHFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQCCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGMLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDDFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKMCCKEIVEEAIKRGATDNLTVVLVSFHMEPPPPVVFQRPKFRRSISAEGLQNLKFLLEG 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30623432 30628897 - Sed0019171.1 Sed08g1554 723330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1554 385 CDD PP2Cc 87 352 IPR001932 -
Sed08g1554 385 PANTHER PROTEIN PHOSPHATASE 2C 67 352 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed08g1554 385 MobiDBLite consensus disorder prediction 1 26 - -
Sed08g1554 385 SUPERFAMILY PP2C-like 77 353 IPR036457 -
Sed08g1554 385 ProSiteProfiles PPM-type phosphatase domain profile. 87 352 IPR001932 -
Sed08g1554 385 SMART PP2C_4 77 350 IPR001932 -
Sed08g1554 385 Gene3D - 68 355 IPR036457 -
Sed08g1554 385 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169(InterPro)
Sed08g1554 385 Pfam Protein phosphatase 2C 99 344 IPR001932 -
Sed08g1554 385 FunFam Probable protein phosphatase 2C 22 70 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1554 Sed-Chr8:30623432 Sed13g2205 Sed-Chr13:26558900 1.80E-86 dispersed
Sed08g1554 Sed-Chr8:30623432 Sed08g1555 Sed-Chr8:30623432 4.40E-165 tandem
Sed11g0178 Sed-Chr11:1590520 Sed08g1554 Sed-Chr8:30623432 1.50E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39358 PF00481 PP2C 6.10E-67 CL0238 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1554 K14803 - csv:101210349 672.159