Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1555 ATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCGGTAGTTTTCTCAATGAGGAAGCTGTCTCTTTCTACGGTGTATTTGATGGTCATGGAGGAAAAGACGCTGCACAATTTGTTCGTGATCACTTGCCGAGAGTCATTGTCGAAGATTCCCACTTTCCTTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAGACATCTCTATCTTCTGGCACAACTGCACTTACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCAGTATTATCAAGGCAGTGCTGTGCAATAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAACGGAAGCGAATCGAGGCCTTGGGTGGATTCATTGACGACGATTATCTAAATGGCATGCTCGGGGTGACACGTGCAATAGGTGATTGGCATCTTGAAGGAATGAAGGAAATGAGCGAAAGAGGTGGACCGTTGAGTGCTGAACCTGAACTTCGATTAATGACACTGACGAAGGAGGACGATTTCTTGATCATAGGTAGCGATGGAATATGGGACGTGTTCACAAGTCAAAACGCTGTCGACTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTAAAAATGTGCTGCAAGGAAATAGTAGAAGAAGCCATAAAGAGAGGAGCAACAGACAATTTGACAGTGGTCTTGGTTAGCTTTCACATGGAACCACCTCCTCCTGTAGTTTTTCAGAGGCCAAAATTTAGAAGAAGCATTTCAGCAGAGGGGCTTCAAAACCTCAAATTTCTGCTAGAAGGATAG 861 44.83 MEDTHVCIHDMAKKFGGSFLNEEAVSFYGVFDGHGGKDAAQFVRDHLPRVIVEDSHFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQCCAIEMSKDHRPCCTKERKRIEALGGFIDDDYLNGMLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDDFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKMCCKEIVEEAIKRGATDNLTVVLVSFHMEPPPPVVFQRPKFRRSISAEGLQNLKFLLEG 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30623432 30627585 - Sed0019171.2 Sed08g1555 723331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1555 286 Gene3D - 1 256 IPR036457 -
Sed08g1555 286 ProSiteProfiles PPM-type phosphatase domain profile. 1 253 IPR001932 -
Sed08g1555 286 PANTHER PROTEIN PHOSPHATASE 2C 1 253 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed08g1555 286 CDD PP2Cc 1 253 IPR001932 -
Sed08g1555 286 ProSitePatterns PPM-type phosphatase domain signature. 27 35 IPR000222 GO:0043169(InterPro)
Sed08g1555 286 SMART PP2C_4 1 251 IPR001932 -
Sed08g1555 286 FunFam Probable protein phosphatase 2C 22 1 256 - -
Sed08g1555 286 Pfam Protein phosphatase 2C 1 245 IPR001932 -
Sed08g1555 286 SUPERFAMILY PP2C-like 1 254 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1555 Sed-Chr8:30623432 Sed11g0178 Sed-Chr11:1590520 1.70E-153 dispersed
Sed08g1554 Sed-Chr8:30623432 Sed08g1555 Sed-Chr8:30623432 4.40E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1555 K14803 - csv:101210349 534.258