Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1568 ATGGCCGCCAATGGGGTTTTCGCAGAGATTCTCGACGGCGAAGTTTACAATTACTATTCCGAAGGCGAGTGGAAGAAATCCTCCTCGGGGAAGAGCGTCGCCATTATCAACCCCACTACCAGGAAGACCCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAGTTGCTCAGAAATCATGGGCTAAGACTCCATTGTGGAAGAGGGCTGAGCTGCTTCATAAGGCAGCTGCCATTTTGAAAGAACACAAAGCCCCAATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCCAAAGATGCTGTCACTGAGGTTGTGAGATCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAAGGGAAGTTCTTGGTTTCTGATAGTTTTCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATTCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTTAATCTGGCTGTCTCAAAAATTGCCCCGGCTTTGATTGCTGGAAATTCCATCGTCCTCAAGCCACCTACTCAGGGTGCTGTTTCTGCTCTTCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGAAAAGGTTCAGAGATAGGTGATTTCCTCACGATGCATCCAGGCGTCAATTGTATAAGCTTCACTGGTGGAGATACTGGTATTGCAATTTCAAAGAAGGCCGGCATGATCCCTCTTCAGATGGAGCTGGGTGGCAAAGACGCCTGCATTGTTCTTGAGGATGCAGATCTCGATTTAGTCACCGCAAACATCATCAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTCAAGGTTGTTTTGGTAATGGAGTCTGTAGCAGATGCTTTGGTCGAAAAAGTAAATGCCCGGGTGGCTAAATTAACTGTTGGCGCCCCGGAAGACGACTCAGACATTACTCCTGTCGTGACTGAATCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATATGGCCCCTGTTGTTGGATAATGTTAGGCCTGATATGAGAATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTCATAAGAATCAGTTCTATTGAAGAAGGAATCCACCATTGCAATGCTAGCAACTTTGGACTTCAGGGGTGTGTCTTCACAAAGGACATCAACAAAGCGATATTGATAAGCGACGCAATGGAAACAGGGACAGTTCAAATAAACTCTGCACCTGCTCGAGGACCTGATCATTTCCCATTTCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGAGTTACCAACAGCATCAACATGATGACTAAAGTGAAGACCACAGTTATCAACTTGCCTACACCTTCCTACACCATGGGTTAG 1491 45.67 MAANGVFAEILDGEVYNYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKVAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVTANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30751095 30754372 + Sed0026764.2 Sed08g1568 723344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1568 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Sed08g1568 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491(InterPro)
Sed08g1568 496 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Sed08g1568 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 283 - -
Sed08g1568 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Sed08g1568 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Sed08g1568 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
Sed08g1568 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Sed08g1568 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Sed08g1568 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1568 Sed-Chr8:30751095 Sed08g1569 Sed-Chr8:30751254 5.30E-288 tandem
Sed11g0187 Sed-Chr11:1703788 Sed08g1568 Sed-Chr8:30751095 3.00E-247 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1568 K00131 - csv:101208699 954.51