Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1569 ATGGCCGCCAATGGGGTTTTCGCAGAGATTCTCGACGGCGAAGTTTACAATTACTATTCCGAAGGCGAGTGGAAGAAATCCTCCTCGGGGAAGAGCGTCGCCATTATCAACCCCACTACCAGGAAGACCCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAGTTGCTCAGAAATCATGGGCTAAGACTCCATTGTGGAAGAGGGCTGAGCTGCTTCATAAGGCAGCTGCCATTTTGAAAGAACACAAAGCCCCAATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCCAAAGATGCTGTCACTGAGGTTGTGAGATCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAAGGGAAGTTCTTGGTTTCTGATAGTTTTCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATTCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTTAATCTGGCTGTCTCAAAAATTGCCCCGGCTTTGATTGCTGGAAATTCCATCGTCCTCAAGCCACCTACTCAGGGTGCTGTTTCTGCTCTTCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGAAAAGGTTCAGAGATAGGTGATTTCCTCACGATGCATCCAGGCGTCAATTGTATAAGCTTCACTGGTGGAGATACTGGTATTGCAATTTCAAAGAAGGCCGGCATGATCCCTCTTCAGATGGAGCTGGGTGGCAAAGACGCCTGCATTGTTCTTGAGGATGCAGATCTCGATTTAGTCACCGCAAACATCATCAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTCAAGGTTGTTTTGGTAATGGAGTCTGTAGCAGATGCTTTGGTCGAAAAAGTAAATGCCCGGGTGGCTAAATTAACTGTTGGCGCCCCGGAAGACGACTCAGACATTACTCCTGTCGTGACTGAATCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATATGGCCCCTGTTGTTGGATAATGTTAGGCCTGATATGAGAATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTCATAAGAATCAGTTCTATTGAAGAAGGAATCCACCATTGCAATGCTAGCAACTTTGGACTTCAGGGGTGTGTCTTCACAAAGGACATCAACAAAGCGATATTGATAAGCGACGCAATGGAAACAGGGACAGTTCAAATAAACTCTGCACCTGCTCGAGGACCTGATCATTTCCCATTTCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGAGTTACCAACAGCATCAACATGATGACTAAAGTGAAGACCACAGTTATCAACTTGCCTACACCTTCCTACACCATGGGAACCAAGCCTGTAAATAAGAGAGTCATAGGCTCCAAATTGTGA 1530 45.56 MAANGVFAEILDGEVYNYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKVAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVTANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMGTKPVNKRVIGSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30751254 30754928 + Sed0026764.1 Sed08g1569 723345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1569 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Sed08g1569 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
Sed08g1569 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Sed08g1569 509 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Sed08g1569 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Sed08g1569 509 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Sed08g1569 509 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491(InterPro)
Sed08g1569 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Sed08g1569 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 283 - -
Sed08g1569 509 CDD ALDH_F11_NP-GAPDH 15 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1569 Sed-Chr8:30751254 Sed11g0187 Sed-Chr11:1703788 1.30E-246 dispersed
Sed08g1568 Sed-Chr8:30751095 Sed08g1569 Sed-Chr8:30751254 5.30E-288 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1569 K00131 - csv:101208699 954.51