Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1570 ATGAGACTCACCAATTCCCTCCCGGACCTCCATAGCCACCGCCGTAACCGGCCGCCGGAGACCGATCCCTCTCAACTCCTCCACCTTCAAACCTCCCATTTTCACCCTCCTTCCTTCTCCTCCGACGACTTCCTCGACCAAATCTTCCCCACTCCCTGGGAACTCCACGCCGCCTCCCTCCCTCCTCAGCCGCCATCGCCGCCGCTCAATCCCGCCTTCCAGATCGGCGACTCCACTCCGGCCGCCAAGATGGCCATGGCCATGCTTCAACAGCAGTTACTCACCGCCGCGGACTCCGGCCTCCTTCCATTTCCCGGTAACGACGTCGTTGAAGCCGACCACTCTTCCTCCTTCAAATGCCCTAACTCGATCATCGGCGACGGTTCTGTTTTCCCGTCTCTCTTCAACGAATTCGCCGGATTTCTGAACCAGAATCAATCTCAGGGAAATGCAAATTCAAATTCAGATCTACAGAAGCAAAGCTTTGGAGCTACGGTATCGGCGAATGCTGCACCGCCGGCGGGTGGTAGCTCTGCAGCGGCGCCGCCGCGGCAGAGAATCAGAGCTCGGCGAGGACAAGCCACAGATCCTCACAGCATAGCGGAAAGATTACGAAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACCTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTATGAGCAGGCTGGGTGGTGCCACTGCAGCCATGCCCTCCCAGCTACCACCTGAAATTTCCTCTCAGGGTGGGACTGACTGTAACCAGTCCAACGGAAGCGGTGGAGCTCCGCCGAGCGACGAAGCGATGACGGTGACGGAGAATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCCATCTCCACCGCCACGTGTCACAGCCGCCCCATCACGGCGTCTAATGGCAGCGGCGGAGACTGCCCCACTTCCCCCACCTTGTCGGCGTTGACCGTTCAGTCAACCGCCTTCGGCAACGGCACCGTCAAAGACTCCGCCTCCGTTTAA 1137 57.61 MRLTNSLPDLHSHRRNRPPETDPSQLLHLQTSHFHPPSFSSDDFLDQIFPTPWELHAASLPPQPPSPPLNPAFQIGDSTPAAKMAMAMLQQQLLTAADSGLLPFPGNDVVEADHSSSFKCPNSIIGDGSVFPSLFNEFAGFLNQNQSQGNANSNSDLQKQSFGATVSANAAPPAGGSSAAAPPRQRIRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYLKFLQLQVKVLSMSRLGGATAAMPSQLPPEISSQGGTDCNQSNGSGGAPPSDEAMTVTENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITASNGSGGDCPTSPTLSALTVQSTAFGNGTVKDSASV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30760877 30764872 + Sed0005538.1 Sed08g1570 723346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1570 378 MobiDBLite consensus disorder prediction 260 292 - -
Sed08g1570 378 MobiDBLite consensus disorder prediction 7 21 - -
Sed08g1570 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 252 IPR036638 GO:0046983(InterPro)
Sed08g1570 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983(InterPro)
Sed08g1570 378 FunFam Transcription factor bHLH66 190 255 - -
Sed08g1570 378 MobiDBLite consensus disorder prediction 167 201 - -
Sed08g1570 378 SMART finulus 199 248 IPR011598 GO:0046983(InterPro)
Sed08g1570 378 MobiDBLite consensus disorder prediction 1 25 - -
Sed08g1570 378 MobiDBLite consensus disorder prediction 264 292 - -
Sed08g1570 378 Pfam Helix-loop-helix DNA-binding domain 198 243 IPR011598 GO:0046983(InterPro)
Sed08g1570 378 Gene3D - 188 250 IPR036638 GO:0046983(InterPro)
Sed08g1570 378 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 330 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1570 Sed-Chr8:30760877 Sed12g2300 Sed-Chr12:33179441 1.70E-73 dispersed
Sed08g1570 Sed-Chr8:30760877 Sed08g0596 Sed-Chr8:4098574 5.70E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39360 PF00010 HLH 8.40E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1570 - - - 0.0