Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1571 ATGGCGGAGAAAGGCAGAGACGGCGGCGGAAAATCGTGCTTACTCGACGGAAAGTACGAACTAGGCCGTCTTCTTGGGCACGGAACCTTCGCCAAGGTCTACCACGCTCGGAATCTGCGAACGGGGAAGAGCGTCGCCATGAAAGTGGTCGGGAAGGAGAAGATCATCAGAGTCGGAATGGCGGAGCAAATCAAGAGAGAGATCTCGGTGATGAAAATGGTGGAGCATCCGAACATTGTGGAGCTTCACGAAGTGATGGCGAGCAAATCCAAGATCTACTTCGCCATGGAGCTTGTCAGAGGCGGCGAGCTCTTCTCCAAAGTCGCCAAGGGCCGATTGCGAGAGGATGCGGCTAGGGTTTACTTTCAGCAGTTGATCTCCGCCGTCGATTTCTGCCACAGCCGTGGAGTTTATCACCGAGATCTGAAGCCGGAGAATCTGCTTCTGGATGAACACGGTAACCTTAAGGTTACCGATTTCGGCCTCACCGCCTTCTCCGAGCACTTGAAGCAGGACGGACTCTTGCACACCACTTGCGGAACTCCGGCCTACGTCGCGCCGGAGGTCATCGGAAAACAAGGATACGACGGCGCCAAGGCGGATCTGTGGTCTTGTGGAGTCATTTTGTATGTTCTTCTTGCAGGATACCTTCCATTTCAGGACGACAATACGGTGGCCATGTACAAGAAAATTTACAGAGGCGACTTCAAATGCCCGCCGTGGATCTCATCCGACGCCCGTCGCCTCATCACCAAGCTTCTCGATCCCAATCCATTGACCAGAATCGGAATTGCAAAGATCACATCCTCGTCCTGGTTCAAGAAATCGATACCGAGGACGATGATCTCGAAGGAGGAACAAGAACAAGAACAAACGGAGGAGAATTTCGCGAAATCAAAGCAACCGGCAGAGATAATGAATGCGTTTCACATAATTTCACTATCGGAAGGGTTCGATCTGTCGCCATTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGATAAGATTTGCGACTTCGACATCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGGGAAGGCGGGGAAATTCGATGTGAAGAAGAGCGAGTCGTGGGTGAGATTGCAGGGGAAAGAGAAGGGGAGGAAGGGGAAGCTGGCGATTGCGGCGGATATCTTCGCGGTGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAATGGAGATACTTTGGAGTACAACCAGTTCTGCAGGAAGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACTTCTAATTTGACCCCAGCTTGA 1302 52.53 MAEKGRDGGGKSCLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIRVGMAEQIKREISVMKMVEHPNIVELHEVMASKSKIYFAMELVRGGELFSKVAKGRLREDAARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNTVAMYKKIYRGDFKCPPWISSDARRLITKLLDPNPLTRIGIAKITSSSWFKKSIPRTMISKEEQEQEQTEENFAKSKQPAEIMNAFHIISLSEGFDLSPLFEEKKREEKEEIRFATSTSASSVISKLEEVGKAGKFDVKKSESWVRLQGKEKGRKGKLAIAADIFAVTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSNLTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30794847 30796731 - Sed0000915.1 Sed08g1571 723347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1571 433 Gene3D Phosphorylase Kinase; domain 1 17 100 - -
Sed08g1571 433 Gene3D Transferase(Phosphotransferase) domain 1 101 301 - -
Sed08g1571 433 CDD STKc_SnRK3 18 272 - -
Sed08g1571 433 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Sed08g1571 433 FunFam Non-specific serine/threonine protein kinase 11 98 - -
Sed08g1571 433 Gene3D Kinase associated domain 1, KA1 302 427 - -
Sed08g1571 433 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524(InterPro)
Sed08g1571 433 CDD CIPK_C 307 422 - -
Sed08g1571 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1571 433 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1571 433 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1571 433 SUPERFAMILY Protein kinase-like (PK-like) 16 291 IPR011009 -
Sed08g1571 433 FunFam Non-specific serine/threonine protein kinase 10 301 - -
Sed08g1571 433 FunFam Non-specific serine/threonine protein kinase 300 426 - -
Sed08g1571 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed08g1571 433 SMART serkin_6 19 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1571 433 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0592 Sed-Chr8:4062597 Sed08g1571 Sed-Chr8:30794847 3.80E-202 dispersed
Sed08g1571 Sed-Chr8:30794847 Sed14g0587 Sed-Chr14:5939868 6.90E-143 dispersed
Sed08g1571 Sed-Chr8:30794847 Sed12g2295 Sed-Chr12:33140273 5.00E-202 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79636 PF00069 Pkinase 4.20E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1571 - - - 0.0