Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1575 ATGAACCAATTTCTGACAGCCTTCCGCCACCGCGGTCTCCGGCGATGGCTCCATTACAAGGCACCAAAGGCACCGTCACCAGCGGCGCCGCCGAAGCCTCCGAAGAAGCCACAGAGCTTCTCAATGCACGAGATCAGTTGGGAGGATCCATACAGTTGGATGTCGAGCTTGAACGACAAGGTAGCGATGCGGCATATGGACGTTTACATGGAGCAGGAGGAGAAGTACACGGAGGCTGTAATGGCCGGAACTGAACGCCTTCAGAGTAAGCTTCAATCTGAAATGGCTTCTCGTTTGGCTTTCGATCTCTCTACCCCTCCCCTTCGCTGGGGCCCTTGGCTGTATTATCGAAGAGTTGAAGAGGGGAAGCAGTATCCTGTTCTCTGCCGCAGATTAGCCAGCTTACATGAAGAATTTATTTCCAATAAATCTCCTTCCGCGGGATTTGATTATGTTTCCGGCAAGAAAATTGAGCAGAAGTTGCTTGATTACAATCAAGAAGCTGAGAGATTCGGAGGTTATGCTTTTGAGGAGCTATCAGAAGTATCTCCAGACCATCGTTTTCTTGCATACACTATGTATGACAAGGATAATGACTACTTCAGATTATCTGTAAAAAATTTGAATTCTGGTTCTCTATGTAGTAAGCCTCAAGTGGATCGAGTTTCAAATTTGGCATGGGCCAAAGGTGGCCAGGCATTGCTCTATGCTGTTACTGATCAAAATAAAAGACCATGTAGGTTGTATTGTAGCATGATCGGATCAACTGATGAAGATATTTTGCTTCTGGAAGAACTCGATGTGGATGTTCATGTATATATTAGACACACTAAAGACTTTCGTTTTGTTACTGTTAATCGATTCTCTCCTACATCTTCCAAGGTTTTTCTGATTGATGCTGCCGATCCCTTATCCGATATGAATCTAATATGGGAGTGTGAAGGATTGGTCCAGTGCGTAATGGAACATCATCTAGGAGATCTTTACTTGTTTACGGATGCTAACAAAGGTCATGCAGCAGTAGATTCTCATTATCTCCTTCGTAGTCCTCTTAATGTCGATTCTACTTCAAGAACATGGGAGCATGTATTTGTTGATGACCCGGGCTTCGTGATTGTGGATATTGATTTCAGCCACACGCATTTGGTGCTTATACTTAGGGAAGGCCAGAAATTTAGACTCTGTGCTGTTCGTGTACCCTTGCCTGTTGGTGGAAAGGGACCAATCAATCTCAAAGAACTTGAACTACAATTTCTGCCTCTTCCTAAGCATGTATCACAGATTTCCCCAGGGCCTAATTATGACTATTATTCATCAACAATGCGCTTTACTATTTCATCGCCTGTGATGCCTGATGCTGTGGTTGATTATAACCTATCAGATGGAAAATGGAATATCATTCAACAGCAAAGCATTCTTCATGAAAGAACACGAGTTCTTTATGGAACAACTTCCTCTGCAGGTGCATCAGGGAACATATCTAATGTGCTGGGGAATTCTGTGGGTGCAGCCGACTTCAATGATGATCAGATGTGGAACACCCTCTCAGAATTTTATGCTTGCGAACACTTCAATGTCTCATCACATGATGGAGTTTTGATTCCTTTAACAGTTGTATACTCTTACAAGTGTAAAAAGGAAAATGAAAACCCTGGACTACTTCATGGACATGGAGCTTACGGCGAGCTACTTGACAAACGGTGGCGCAGCGAGTTGAAAAGCCTTCTCGATCGCGGTTGGGTTATTGCATATGCTGATGTTAGAGGTGGAGGTGGTGGGGGCAAGAAGTGGCATGATGATGGTAGGCGTACAAAGAAGTTCAATTCAGTTCAAGATTATATTTCATGTGCTAAATTCCTGGCTGAAAGAAAGATTGTAAATGAAGAGAAGCTTGCTGGTTGGGGCTATAGTGCTGGGGGACTTTTGGTTGCTTCTGCCATCAATCAATACCCAGAATTATTCCGAGCCGCTATTTTGAAAGTTCCATTTCTAGATCCAATAAACACACTCCTTCACCCTATTATACCGCTAACACCTGCTGATTGTCAAGAATTTGGATACCCTGGGGATATAGATGATTTTCATGCAATACGCAGATACTCTCCATATGATAACATACAGAAGGATGTTGCCTACCCTGCCGTCTTGATAACCTCCTCCTTTAATACCCGATTTGGGGTATGGGAAGCTGCAAAATGGATTGCTCGGGTGCGTGAATATAGTATTTATGATCCAAAGCGTCCAGTAATTCTAAATTTATCAACAGACATAGTGGAAGAAAACAGGTTAGGAACAAAAATGGAATAA 2307 43.22 MNQFLTAFRHRGLRRWLHYKAPKAPSPAAPPKPPKKPQSFSMHEISWEDPYSWMSSLNDKVAMRHMDVYMEQEEKYTEAVMAGTERLQSKLQSEMASRLAFDLSTPPLRWGPWLYYRRVEEGKQYPVLCRRLASLHEEFISNKSPSAGFDYVSGKKIEQKLLDYNQEAERFGGYAFEELSEVSPDHRFLAYTMYDKDNDYFRLSVKNLNSGSLCSKPQVDRVSNLAWAKGGQALLYAVTDQNKRPCRLYCSMIGSTDEDILLLEELDVDVHVYIRHTKDFRFVTVNRFSPTSSKVFLIDAADPLSDMNLIWECEGLVQCVMEHHLGDLYLFTDANKGHAAVDSHYLLRSPLNVDSTSRTWEHVFVDDPGFVIVDIDFSHTHLVLILREGQKFRLCAVRVPLPVGGKGPINLKELELQFLPLPKHVSQISPGPNYDYYSSTMRFTISSPVMPDAVVDYNLSDGKWNIIQQQSILHERTRVLYGTTSSAGASGNISNVLGNSVGAADFNDDQMWNTLSEFYACEHFNVSSHDGVLIPLTVVYSYKCKKENENPGLLHGHGAYGELLDKRWRSELKSLLDRGWVIAYADVRGGGGGGKKWHDDGRRTKKFNSVQDYISCAKFLAERKIVNEEKLAGWGYSAGGLLVASAINQYPELFRAAILKVPFLDPINTLLHPIIPLTPADCQEFGYPGDIDDFHAIRRYSPYDNIQKDVAYPAVLITSSFNTRFGVWEAAKWIARVREYSIYDPKRPVILNLSTDIVEENRLGTKME 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30853220 30861366 - Sed0004252.1 Sed08g1575 723351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1575 768 Gene3D - 102 471 - -
Sed08g1575 768 SUPERFAMILY Peptidase/esterase 'gauge' domain 27 472 - -
Sed08g1575 768 Gene3D alpha/beta hydrolase 517 755 IPR029058 -
Sed08g1575 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 577 601 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g1575 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 551 569 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g1575 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 635 655 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g1575 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 693 708 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g1575 768 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 605 624 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g1575 768 Pfam Prolyl oligopeptidase family 570 738 IPR001375 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed08g1575 768 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 33 469 IPR023302 GO:0004252(InterPro)
Sed08g1575 768 SUPERFAMILY alpha/beta-Hydrolases 520 740 IPR029058 -
Sed08g1575 768 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 25 751 IPR051543 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1806 Sed-Chr6:42574596 Sed08g1575 Sed-Chr8:30853220 6.10E-117 dispersed
Sed06g1807 Sed-Chr6:42574596 Sed08g1575 Sed-Chr8:30853220 1.30E-122 dispersed
Sed07g2369 Sed-Chr7:39543318 Sed08g1575 Sed-Chr8:30853220 1.50E-60 dispersed
Sed07g2370 Sed-Chr7:39543318 Sed08g1575 Sed-Chr8:30853220 2.10E-49 dispersed
Sed08g1575 Sed-Chr8:30853220 Sed07g2368 Sed-Chr7:39517881 1.10E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g945 . . . . Bpe13g01395 . . . Cmo04g01650 . . . Car04g01628 . Sed08g1575 . Cpe01g01400 Bhi07g01449 Tan04g0961 Cmetu10g1342 Lac13g0407 Hepe10g1818 . . . . . . . . . Cone13ag0930 Cone19ag0923 Cone6ag0559 Cone9ag0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009627 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 1 1 1 33