Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1584 ATGGCAAATCGGTGGTGGACTTCCGGCCAGATGGGTCTTCCCGGAGTTGATCATGTCATGAGAAAACCAGATCTGGGGATCTCCATGAACGACAACGGAGGACCGATTAACAGCGGCGGTGCAGACGACGATGACGATAGGGATAACGCCGACGATGAGCCTAAAGAAGGAGCTGTTGAAGTTCCAACGCGCCGCCCTCGTGGCCGACCGCCCGGCTCCAAGAACAAGCCCAAGCCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAAATTTCTAATGGCTCTGATATAGCTGAGAGTATTGCTCAATTCGCCCGACGGCGACAAAGAGGTGTTTCTGTGCTTAGCGGAAGCGGCACGGTAACGAACGTGACACTACGGCAACCGTCTGCACCCGGTGCAGTCTTGAACCTCCATGGCCGATTCGAGATTCTTTCTTTGACCGGAACTTTTCTCCCTGGCCCTGCCCCGCCCGGCTCGACAGGACTAACAATCTACTTGGCTGGCGGTCAAGGGCAGGTGGTGGGTGGCAGTGTCGTCGGGCCACTCACCGCAGCTGGCCCGGTGATGGTGATTGCTGCAACGTTCTCGAATGCAACATATGAACGACTACCCTTGGAAGAGGAGGAAGATGGAGGAGCACAAGGGCTTGCAACCACAGGAGGGGGTGCAGGCGATGATTCGCCACAGGGCATCGGTAGCGGAGTCGGGGTCGGAGATCCATCAGCTATGCAACCGCCCCTGTACAATTTACCACCAAATTTGCTGTCGAACGGCAGCGGTGGGCAGATGAACCAAGAGGCTTATTCTTGGGCTCACGGCGGCCGCCCGCCGTTCTAA 861 56.21 MANRWWTSGQMGLPGVDHVMRKPDLGISMNDNGGPINSGGADDDDDRDNADDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGSDIAESIAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLNLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEDGGAQGLATTGGGAGDDSPQGIGSGVGVGDPSAMQPPLYNLPPNLLSNGSGGQMNQEAYSWAHGGRPPF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30942651 30944277 - Sed0005027.1 Sed08g1584 723360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1584 286 CDD DUF296 92 175 IPR005175 -
Sed08g1584 286 MobiDBLite consensus disorder prediction 258 274 - -
Sed08g1584 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 216 - -
Sed08g1584 286 PIRSF ESCAROLA 21 286 IPR014476 GO:0003680(InterPro)
Sed08g1584 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 286 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed08g1584 286 ProSiteProfiles PPC domain profile profile. 88 227 IPR005175 -
Sed08g1584 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 204 IPR005175 -
Sed08g1584 286 FunFam AT-hook motif nuclear-localized protein 91 218 - -
Sed08g1584 286 MobiDBLite consensus disorder prediction 214 286 - -
Sed08g1584 286 MobiDBLite consensus disorder prediction 1 89 - -
Sed08g1584 286 Gene3D - 92 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2395 Sed-Chr1:17997694 Sed08g1584 Sed-Chr8:30942651 2.70E-60 dispersed
Sed02g1392 Sed-Chr2:50143157 Sed08g1584 Sed-Chr8:30942651 8.20E-81 dispersed
Sed05g0860 Sed-Chr5:6877873 Sed08g1584 Sed-Chr8:30942651 6.40E-68 dispersed
Sed05g1564 Sed-Chr5:29402132 Sed08g1584 Sed-Chr8:30942651 1.10E-40 dispersed
Sed07g2504 Sed-Chr7:40768217 Sed08g1584 Sed-Chr8:30942651 5.60E-63 dispersed
Sed07g2505 Sed-Chr7:40768217 Sed08g1584 Sed-Chr8:30942651 5.60E-63 dispersed
Sed08g0394 Sed-Chr8:2381718 Sed08g1584 Sed-Chr8:30942651 3.00E-59 dispersed
Sed08g1129 Sed-Chr8:21961389 Sed08g1584 Sed-Chr8:30942651 6.20E-15 dispersed
Sed08g1584 Sed-Chr8:30942651 Sed11g0198 Sed-Chr11:1793311 5.60E-117 dispersed
Sed08g1582 Sed-Chr8:30909944 Sed08g1584 Sed-Chr8:30942651 3.30E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1584 - - - 0.0