Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g1586 | ATGCAGGGTACACCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAGGATCCAGATGATGCTTGGGTTGATGGACAGGTATCCAAGATTACAGGGCAAGAAGCTGAGATTACAGCCAGCAATGGAAAAACAGTTGTTGCAAAATTATCCAAAATATATCCAAAAGATATGGAGGCTCCAGCTGGTGGCGTTGATGACATGACGAAGCTATCGTACCTGCACGAGCCTGGAGTTCTACAAAATTTAAAATCTCGATATGAACTCAATGAAATCTATACATACACTGGCAACATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATATTTATGATAGTCACATGATGCAACAATACAAAGGAGCACCATTTGGAGAATTGAGTCCTCATGTTTTTGCGGTTGCTGATGTTGCATACAGGGCAATGATTAATGAGGGTAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAGATGCTTATGCGCTACCTTGCATTTTTAGGGGGTCGAGCGGCCACTGAAGGGCGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTTAGAAATAACAATTCCAGTCGCTTTGGTAAGTTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTGTTCGAACTTACCTTCTTGAGAGATCTCGTGTTTGCCAAGTTTCCGATCCTGAGCGCAATTATCACTGCTTTTACCTTCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAATACAAGCTGGGAAATCCCAAATCATTTCATTATCTTAATCAATCAAGCTGCTATGAACTGGTTGGTGTAAGTGATGCTCATGACTATCTTGCCACCAGAAGAGCCATGGATATTGTTGGAATAAGTGCTAAGGAGCAGGAAGCAATTTTTAGAGTTGTTGCTGCTATTCTTCATCTTGGCAACATTGTATTTGCCAAGGGCAAAGATGTTGATTCATCTGTTCCAAAAGATGACCAGGCCAAGTTTCATCTTAAAATGACTGCAGAGCTTCTCATGTGTGATAAGGATGGTCTTGAAGATGCATTATGTAAGCGTGTCATGGTCACACCTGAAGAAGTGATCAAACGTAGCTTGGATCCTCAAAGTGCGGCTATAAGCCGTGATGGTCTGGCCAAAACTATATACTCTCGACTCTTTGACTGGCTAGTTGATAAAATTAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCCTGATTGGGGTTCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATTAATTGGAGTTACATTGAGTTTGTTGACAACCAAGATGTGTTGGATCTCATTGAAAAGAAACCTGGTGGAATTGTAGCTCTCCTTGATGAAGCATGCATGTTTCCAAAGTCAACACATGAAACATTTGCTAACAAACTTTATCAGACTTTCAAAACACATAAACGGTTCATAAAGCCAAAACTTTCTCGAACGGATTTTACCATTGCTCATTATGCTGGAGAGGTTTTATATCAATCTGATCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAACATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTGGCTGGCCTTTTCCCCCCACTAAAAGAAGAATCTGCTAAATCTTCCAAGTTTTCGTCTATCGGGTCTCGTTTTAAGCTACAACTACAATCGTTAATGGAGACATTAAATTCCACAGAACCTCACTACATCAGATGTGTGAAGCCAAACAACCTCTTAAAACCAGCCATCTTTGAGAATGTCAATATAATGCAGCAACTGCGTTGTGGTGGTGTCTTGGAGGCAATCAGAATTAGTTGTGCAGGGTACCCTACTCGCCGTGCATTCTTTGAATTCATTAACCGATTTGGAATTTTAGCTCAAGAATCTTTGGAAGTAAACTATGATGAAAAAAGTGTGAGCAAAAAGATACTAGAAAAGCAGGGTCTTAAAGGGTTTCAGATAGGTAAGACAAAAGTATTTCTGAGGGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCAGAGGTGTTGAGTGCTGCAGCAAAGACTATTCAACGGCGCATACGAACCCATATTGCTCGCAGGCAGTTTATTGCATTACGAAAAGCAACCATACGAGTGCAATCTATGTGGAGAGGAAAACTGGCTTGCAAACAATACAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTAGAAGATTTCATGCGAGAAAAGCCTATAAAAGACTACAAAGCTCAGTGCTTTATGTGCAAACTGGTTTAAGGGCAATGGCAGCTAGGAATGAATTCAGATTTAGGAAGCAGACAAAGGCTTCAATTATCATTCAGGCTCGATGGCGTTGCTATAAAGCTACCTCATATTATAAGAAACTTCGAAGAGGTGCAGTAGTTGCGCAATGTAGATGGAGGGGAAAAGTTGCAAGACATGAACTTAGAAAACTCAAATTGGCTTCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGACAAATTGGAAAAGAAAGTGGAGGAACTTACTTGGCGCATACAATTAGAAAAACGTCTAAGGACGGACCTGGAAGAGGCAAAAGCACAAGAGATAGCAAAATTCCAAAACATTATGCAAGAACTGCAAACAAAAGTTGAGGAAACAAACTCGTTGCTTGCAAAGGAGCGAGAGACTGTAAAGAAGTCTATTGAAGAAGCACCTCCAGTTATACAAGAAACCCAAGTTCTGGTTGAAGATACTAAGAAAATTGATGCTTTGACAGAAGAAGTAGAAAGCTTAAAGACCTCACTGGATACAGAGAAAAACAGAGCTGATGAATATGAGAAAAAATGTGGTGAAGTACAACAGTCTAAAGAAGAACAAGGTAAAAAGTTGGAAGACACTGTGAAAAAGGCTCATCAGCTCCAGGAATCCTTGACTAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAAAATCAAGTTTTACGCCAACAAGCTGTGTCTATGGCACCTAATAAAATTCTCTCAGGACGGTCGAGATCAATTCTTCAGAGAGGTGCAGATAGTGGTCATTATGGAGGGGAAGGGAGGACACCTTTGGATCTACACAGCTCCTCTATTAACCAAAGGGATTCAGAAGTAGAGGATAAACCTCAGAAATCACTTAATGAGAAACAGCAAGAGAATCAAGAATTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCATCAAACAGGCCAATTGCTGCTTGTATCATCTACAAGTGCTTGCTTCAGTGGAGGTCATTCGAAGTCGAACGCACCAGTGTGTTTGACAGGATAATTCAAACTATAGGCAATGCAATTGAGACTCAGGATAACAACGACGTCTTGGCCTATTGGTTGTCCAATGCTTCCACACTTCTCTTACTGCTTCAGCGAACTTTGAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAACGCCGGCGATCTTCATCAGCTACGCTATTTGGGAGGATGACTCAAAGTTTTCGAGGAGCGCCACAAGGAGTCAATCTATCCTTAGTCAATGGTGGGACTAATGGTTCAGGGGACACTTTAAGGCAAGTTGAAGCAAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCATATGTTGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTATGGTGAAGGGATCTTCTCGTTCTGTTGCCAACATGGAGGGCCAACGCGCCTTAATTGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGAAACTTCTTAAACACCTTAAAAGAAAATCATGTACCCCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTCAACAGTCTTCTATTACGACGAGAGTGTTGTTCGTTTAGCAATGGTGAATATGTCAAAGCTGGGCTGTCTGAGTTAGAGCAATGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCCGCTTGGGACGAGCTAAAGCATATAAGACAAGCGATCGGGTTTCTGGTTATTCATCAAAAGCCAAAGAAGACACTAGACGAAATCAGTCACGATCTATGCCCTGTATTAAGCATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGCACTCATAGTGTTTCGCCTGACGTCATATCCAATATGAGGGTGCTAATGACAGAAGATTCAAACCATGCAATTAGCAATTCATTTCTACTGGACGACGATTCAAGCATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGCAACAAATAGATATCGGAGACATCGAACCGCCACCATTGATTCAGGAGAACTCAGGCTTTAGTTTCTTGTTACCACGGACAGATTAG | 4593 | 40.98 | MQGTPVNIIVGSHVWIEDPDDAWVDGQVSKITGQEAEITASNGKTVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAVRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSSCYELVGVSDAHDYLATRRAMDIVGISAKEQEAIFRVVAAILHLGNIVFAKGKDVDSSVPKDDQAKFHLKMTAELLMCDKDGLEDALCKRVMVTPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEVNYDEKSVSKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSAAAKTIQRRIRTHIARRQFIALRKATIRVQSMWRGKLACKQYKNLKREAAAVKIQKNARRFHARKAYKRLQSSVLYVQTGLRAMAARNEFRFRKQTKASIIIQARWRCYKATSYYKKLRRGAVVAQCRWRGKVARHELRKLKLASRETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIMQELQTKVEETNSLLAKERETVKKSIEEAPPVIQETQVLVEDTKKIDALTEEVESLKTSLDTEKNRADEYEKKCGEVQQSKEEQGKKLEDTVKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKILSGRSRSILQRGADSGHYGGEGRTPLDLHSSSINQRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFASNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGNAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLVNGGTNGSGDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASMVKGSSRSVANMEGQRALIAHWQGIVKSLGNFLNTLKENHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMQQIDIGDIEPPPLIQENSGFSFLLPRTD | 1530 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 30963986 | 30976097 | + | Sed0003849.1 | Sed08g1586 | 723362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g1586 | 1530 | FunFam | unconventional myosin-Va | 787 | 834 | - | - | |
| Sed08g1586 | 1530 | Gene3D | - | 253 | 311 | - | - | |
| Sed08g1586 | 1530 | Gene3D | - | 440 | 624 | - | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | IQ motif profile. | 855 | 884 | - | - | |
| Sed08g1586 | 1530 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 786 | 884 | IPR027417 | - | |
| Sed08g1586 | 1530 | CDD | MyosinXI_CBD | 1111 | 1496 | IPR037975 | GO:0007015(InterPro) | |
| Sed08g1586 | 1530 | CDD | MYSc_Myo11 | 77 | 721 | IPR036018 | - | |
| Sed08g1586 | 1530 | SMART | iq_5 | 806 | 828 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | SMART | iq_5 | 854 | 876 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | SMART | iq_5 | 831 | 853 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | SMART | iq_5 | 735 | 757 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | SMART | iq_5 | 758 | 780 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | SMART | iq_5 | 783 | 805 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | FunFam | Myosin 2 | 313 | 428 | - | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 9 | 58 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | Gene3D | - | 834 | 883 | - | - | |
| Sed08g1586 | 1530 | Gene3D | - | 786 | 833 | - | - | |
| Sed08g1586 | 1530 | Gene3D | - | 734 | 785 | - | - | |
| Sed08g1586 | 1530 | Pfam | IQ calmodulin-binding motif | 760 | 780 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | Pfam | IQ calmodulin-binding motif | 786 | 805 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | Pfam | IQ calmodulin-binding motif | 833 | 853 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | Pfam | IQ calmodulin-binding motif | 738 | 756 | IPR000048 | GO:0005515(InterPro) | |
| Sed08g1586 | 1530 | Gene3D | - | 668 | 731 | - | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | IQ motif profile. | 736 | 763 | - | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | Myosin motor domain profile. | 63 | 733 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 38 | 786 | IPR027417 | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | IQ motif profile. | 759 | 788 | - | - | |
| Sed08g1586 | 1530 | MobiDBLite | consensus disorder prediction | 1095 | 1111 | - | - | |
| Sed08g1586 | 1530 | MobiDBLite | consensus disorder prediction | 1065 | 1112 | - | - | |
| Sed08g1586 | 1530 | Pfam | Myosin N-terminal SH3-like domain | 10 | 53 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | PANTHER | MYOSIN | 13 | 1472 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0009860(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed08g1586 | 1530 | FunFam | Myosin heavy chain | 253 | 308 | - | - | |
| Sed08g1586 | 1530 | Coils | Coil | 878 | 912 | - | - | |
| Sed08g1586 | 1530 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 313 | 602 | - | - | |
| Sed08g1586 | 1530 | SMART | MYSc_2a | 58 | 734 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | FunFam | Class V myosin | 440 | 576 | - | - | |
| Sed08g1586 | 1530 | FunFam | unconventional myosin-Va | 738 | 786 | - | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | IQ motif profile. | 807 | 836 | - | - | |
| Sed08g1586 | 1530 | MobiDBLite | consensus disorder prediction | 1003 | 1022 | - | - | |
| Sed08g1586 | 1530 | Coils | Coil | 969 | 1010 | - | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | IQ motif profile. | 784 | 811 | - | - | |
| Sed08g1586 | 1530 | Coils | Coil | 917 | 951 | - | - | |
| Sed08g1586 | 1530 | PRINTS | Myosin heavy chain signature | 197 | 224 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | PRINTS | Myosin heavy chain signature | 93 | 112 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | PRINTS | Myosin heavy chain signature | 483 | 511 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | PRINTS | Myosin heavy chain signature | 150 | 175 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | PRINTS | Myosin heavy chain signature | 430 | 458 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | FunFam | unconventional myosin-Va | 835 | 882 | - | - | |
| Sed08g1586 | 1530 | Pfam | DIL domain | 1349 | 1452 | IPR002710 | - | |
| Sed08g1586 | 1530 | Pfam | Myosin head (motor domain) | 65 | 721 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed08g1586 | 1530 | ProSiteProfiles | IQ motif profile. | 832 | 858 | - | - | |
| Sed08g1586 | 1530 | SMART | DIL_2 | 1348 | 1455 | IPR002710 | - | |
| Sed08g1586 | 1530 | ProSiteProfiles | Dilute domain profile. | 1160 | 1473 | IPR002710 | - | |
| Sed08g1586 | 1530 | Gene3D | Kinesin motor domain | 66 | 663 | IPR036961 | - | |
| Sed08g1586 | 1530 | Coils | Coil | 1018 | 1052 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g1586 | Sed-Chr8:30963986 | Sed09g1420 | Sed-Chr9:38078234 | 0.00E+00 | dispersed | |
| Sed08g0895 | Sed-Chr8:7500253 | Sed08g1586 | Sed-Chr8:30963986 | 0.00E+00 | transposed | |
| Sed08g1805 | Sed-Chr8:32762590 | Sed08g1586 | Sed-Chr8:30963986 | 0.00E+00 | transposed | |
| Sed09g1034 | Sed-Chr9:33741678 | Sed08g1586 | Sed-Chr8:30963986 | 0.00E+00 | transposed | |
| Sed11g0201 | Sed-Chr11:1805906 | Sed08g1586 | Sed-Chr8:30963986 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g1586 | K10357 | - | csv:101206606 | 2823.88 |