Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1603 ATGGCTTCCGCCGCCAATCCAGTTGTCCCCTCCGCCGCGCCGGTGGCTGTAGCAGCCGTAGCTCCGGCGAAGAAAGCACCGAAGGCTAAGAAGCCAACTTGTGCGAAGAAATCCAAAGCCTCGTCGACGCATCCTTCCTTCTTTCAGATGATAAGCGAAGCGATCGTTTCGTTGAAGGAGAGGACCGGATCGAGTCAATACGCCATTACGAAGTTCAGCGAGGAGAAGCACAAGCAGTTGCCGGCGAATTTCAGGAAGCTCTTGCTTGTTCATCTCAAGAAACTCGTTGCTGCTGATAAAATCGTGAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCGATTCAGGCGAAGGCAGTAGTGCCAGTCGCCGCTAAGAAACCGTCGAGCGCCAAGCCGAAGGCCGCCGCCGTCGCTAAACCGAAGGCGAAAACTGCTGTGGCTAAACCGAAGGTGAAAAGTGCTGTGGCTAAGCCGAAGGCGAAGGCGGTGGTGATACCGAAGCCGAAGGCGGCGGCGAAGGTGAAGAAGGTTGCTCCGAAGGCGAAACCTGCCGCGAAGGCTGCGAAGGTTGCGAAAACATTGTCCCGGACGTCGCCGGGGAAGAAAGTTGCGGCGGCGGCGAAGGCGAAGAAGGTCGTGGCGAAGAAGCCGAAGAGTGTGAAGTCGCCGGCGAGAAAAGTCCAGGCAAGGAAAGTCAAGAAATGA 711 56.68 MASAANPVVPSAAPVAVAAVAPAKKAPKAKKPTCAKKSKASSTHPSFFQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAVVPVAAKKPSSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPKAKAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAKKVVAKKPKSVKSPARKVQARKVKK 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31162492 31164080 - Sed0021901.1 Sed08g1603 723379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1603 236 MobiDBLite consensus disorder prediction 210 236 - -
Sed08g1603 236 Pfam linker histone H1 and H5 family 44 109 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed08g1603 236 PANTHER HISTONE H1 21 225 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Sed08g1603 236 MobiDBLite consensus disorder prediction 178 236 - -
Sed08g1603 236 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Sed08g1603 236 PRINTS Histone H5 signature 187 206 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Sed08g1603 236 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Sed08g1603 236 PRINTS Histone H5 signature 165 182 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Sed08g1603 236 PRINTS Histone H5 signature 129 143 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Sed08g1603 236 Gene3D - 38 121 IPR036388 -
Sed08g1603 236 SUPERFAMILY Winged helix DNA-binding domain 41 120 IPR036390 -
Sed08g1603 236 CDD H15 41 120 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed08g1603 236 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 112 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed08g1603 236 SMART h15plus2 41 107 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1603 K11275 - - csv:101205659 168.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1603 Sed-Chr8:31162492 Sed11g0217 Sed-Chr11:1989113 2.20E-34 dispersed
Sed01g4329 Sed-Chr1:71391692 Sed08g1603 Sed-Chr8:31162492 1.50E-26 transposed
Sed11g0216 Sed-Chr11:1980920 Sed08g1603 Sed-Chr8:31162492 4.10E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000875 2 2 4 2 3 2 4 2 2 3 2 2 4 3 3 4 2 7 4 2 2 2 3 3 3 2 2 4 4 4 88