Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1624 ATGGCGTTGAGGAGCAGGAAAAGCAACGAGATCGTTGAAGCAGCACTTGATCGTGATCAAGCACACTCGCCAATGGCGAAAACTCACAAACGCCGCTGGAAGATGGCCTTCGCCGCCATTTCTTTCACCAGAGCTCTCATCTCTCTGTCCAGGAAACTCGCCGGCCCTAAATCCGCCGTCCTGTTGCGCTCCATTTCGTACATTGCGGTCGATGTGCCGCCGAGTGATGATTCCAAGGGTTCCGGCGAGTTTCCGTGCATGCCGGCTTTCTCCGGCGAAAATCAGAAATTAGTTCTCAGCGAAATGGTGAGGGAGAAGAGTATTGAGCGTTTGAATCGATTTGGACGCGTTCGCGGTCTGGCGGAGTTTCTCAAAACGGACGCTCATGGCGGAATCTGTGCGACGGAGGATGATTTAGTTTACAGGAAGAACGGATTTGGAACGAATACTTACTCGAAGGTTCCTGGTAGAAATTTCTTGAGCTTCGTGGTGGAAGCGTTTAACGATACTACGATTGTTATTCTTTTGATCTGTGCGGTGCTTTCGTTGGGATTTGGTATCAAACAGCACGGTTGGGACGACGGATGGTACGACGGCGGCAGCATTGTCATCGCTATATTTCTTGTGGTTATCGTCTCCGCTGGGAGTAATTTCAAGCAATCGAGACAGTTCGAGAAGCTTTCGAACGAAAGAGACGATATCAAAATCGAGGTCACCAGAGCCGATCGACGCCAACCTGTGTCGATTTTCGAACTCCTCGTCGGTGACATTGTGCATTTGAAGATTGGAGATCAGATTCCGGCGGATGGAGTGTTCGTCGACGGATATTCGCTGAAAATCGACGAATCGAGCATGACTGGAGAGAGCGAACGCGTTGAGGTAAATCATGAGATTAATCCGTTTTTGTTATCAGGAACGAAAGTGAGCGATGGATTTGGTGTGATGATGGTGACTTCTGTTGGAATGAACACGGCGTGGGGAGAGATGATGAGTTCAATTAGAAGGGAAGTTAATGAGGAAACTCCATTGCAAGCTCGTTTGAACAAGATGACCGCTGTTATCGGGAAGCTAGGGCTCACGGTCGCCGTGCTGGTGCTTCTTGTTCTGCTGGTTCGCTATTTCACTGGGAGTACCCGCGAGTTCAATGGACGCAAGACGAGGTTCAATGATGTGATGAATGCTGTTCTCGGCATGGTTGCGGCTGCTGTTACGATCGTCGTCGTGGCGATTCCGGAAGGTTTGCCTCTTGCTGTTACTTTAACTTTAGCTTACTCCATGAGAAAAATGATGGCAGATAATGCAATGGTTAGGAAACTATCTGCTTGCGAGACTATGGGCTCGGCCACTACTATTTGTACTGATAAAACTGGTACTCTTACTTTGAATGAGATGAAAGTTACTGAGTTTTGGATTGGAGAAAATGAGATTATTGGTAGAGATAACTCCAATTCAAGGATTGGGAGTAATGTTGTTGAATTACTGCACCAAGCAGTTGGATTGAATACAACTGGTAGTGTTCAAAGATCAAGTTCTTCATTGCCTGTAGAAATATTCGGGAGCCCGACCGAGAAAGCTATACTTTCGTGGGCAGTATTTGACATGGAATTGAACCTAGATGAACTGAAGAAACAACATGAGGTAATCCAGGTAGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGAGTTTCGACGAGACGATGTGGCGAAAGGCTTGTTAGTACACACTGGAAAGGAGCAGCAGAGATGATATTAGCCATGTGCTCACATTGTTACGAGAAACAAGGAACAGTTAAAGCCATTGATGGTGAAGCAAGAAGACGGTTGACCGCAATAATCACAACTATGGCAGCAAAAAGTCTGCGTTGCATAGCTTTTGCCCACAAGTCGAACGAAGGCGACGAAAATCAAGAAGATCTTGAGAAACTCAACGAATCGGGATTGACATTACTGGGAATAGTTGGATTGAAGGATCCTTGCAGGCCAGGAGTCAGAGAAGCCGTGGAATCATGCAGAGCTGCTGGAGTGAACGTCAAAATGGTGACAGGAGATAATCTGCACACAGCAACAGCTATAGCAATTGAATGCGGGATACTAGATCTCAACGACACTTCGAATATTCGCGATGCTGTGGTCGAGGGAGTACAATTCAGAAACTACACACCAGAGGAGAGGCTAGAAAAGATTGGGAACATCCGAGTTATGGCTCGATCTTCCCCATTTGACAAGCTTCTGATGGTGCAATGCTTGAAGAGTCAAGGCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCACCTGCTCTTCATGAGGCAGACATTGGCCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAAGAGAGCTCCGACATCGTCATCTTGGACGATAACTTCACATCGGTTGTCACCGTCTTGAAATGGGGAAGATGTGTTTACAACAACATTCAGAAGTTCATTCAATTTCAGCTCACTGTGAATGTTGCAGCACTCATCGTAAACTTCATTGCGGCCGTCTCCTCGGGTAAAGTCCCTTTAACAGCAGTGCAGCTACTATGGGTGAACCTCATCATGGACACCATGGGAGCTTTAGCCTTAGCCACAGAGCTACCCACCAACGATCTCATGCTGAAAACGCCGGTCGGTCGATCGGAGCCGTTGGTGACGAAAGTCATGTGGAGGAACCTCATTGCTCAGGCTGTGTATCAGGTGACAATCTTGCTGGTTTTGGAATTCAAAGGAACATCCATCTTCAATGTGAATGAAAAGGTTAAGAGCACACTGATCTTCAACACTTTTGTTCTGTGTCAAATCTTCAATGAATTCAATGCAAGGAAGTTGGAGAAGAAGAATGTATTTCAAGGGCTACACAAAAGCAAGCTCTTTTTGGCAATCATTATAGTAACCATAGTTTTTCAAGTGATAATGGTTGAGCTCTTGGGAAGATTTGCAAATACAGAAAGGTTGAATTGGGGCCAGTGGGGAGCATGTATTGGGATTGCAGCTTTGTCTTGGCCAATTGGATGGCTCTCAAAGTTAATTCCAGTTTCTGCCAGGCACTTTCCAATTTGGAGAAGAAATTCTGCACCATAA 3093 46.27 MALRSRKSNEIVEAALDRDQAHSPMAKTHKRRWKMAFAAISFTRALISLSRKLAGPKSAVLLRSISYIAVDVPPSDDSKGSGEFPCMPAFSGENQKLVLSEMVREKSIERLNRFGRVRGLAEFLKTDAHGGICATEDDLVYRKNGFGTNTYSKVPGRNFLSFVVEAFNDTTIVILLICAVLSLGFGIKQHGWDDGWYDGGSIVIAIFLVVIVSAGSNFKQSRQFEKLSNERDDIKIEVTRADRRQPVSIFELLVGDIVHLKIGDQIPADGVFVDGYSLKIDESSMTGESERVEVNHEINPFLLSGTKVSDGFGVMMVTSVGMNTAWGEMMSSIRREVNEETPLQARLNKMTAVIGKLGLTVAVLVLLVLLVRYFTGSTREFNGRKTRFNDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMRKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGENEIIGRDNSNSRIGSNVVELLHQAVGLNTTGSVQRSSSSLPVEIFGSPTEKAILSWAVFDMELNLDELKKQHEVIQVETFSSEKKRSGVSTRRCGERLVSTHWKGAAEMILAMCSHCYEKQGTVKAIDGEARRRLTAIITTMAAKSLRCIAFAHKSNEGDENQEDLEKLNESGLTLLGIVGLKDPCRPGVREAVESCRAAGVNVKMVTGDNLHTATAIAIECGILDLNDTSNIRDAVVEGVQFRNYTPEERLEKIGNIRVMARSSPFDKLLMVQCLKSQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALIVNFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMLKTPVGRSEPLVTKVMWRNLIAQAVYQVTILLVLEFKGTSIFNVNEKVKSTLIFNTFVLCQIFNEFNARKLEKKNVFQGLHKSKLFLAIIIVTIVFQVIMVELLGRFANTERLNWGQWGACIGIAALSWPIGWLSKLIPVSARHFPIWRRNSAP 1030
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 31373094 31376220 + Sed0013153.1 Sed08g1624 723400
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1624 1030 SFLD p-type atpase 434 812 IPR044492 -
Sed08g1624 1030 Gene3D - 462 658 IPR023299 GO:0000166(InterPro)
Sed08g1624 1030 FunFam Calcium-transporting ATPase 214 334 - -
Sed08g1624 1030 NCBIfam HAD-IC family P-type ATPase 730 841 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1624 1030 NCBIfam HAD-IC family P-type ATPase 396 477 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1624 1030 Gene3D - 449 804 IPR023214 -
Sed08g1624 1030 FunFam Calcium-transporting ATPase 653 804 - -
Sed08g1624 1030 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Sed08g1624 1030 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Sed08g1624 1030 Pfam Cation transporting ATPase, C-terminus 844 1014 IPR006068 -
Sed08g1624 1030 Pfam haloacid dehalogenase-like hydrolase 450 773 - -
Sed08g1624 1030 NCBIfam calcium-translocating P-type ATPase, PMCA-type 106 1016 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed08g1624 1030 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1017 IPR023298 -
Sed08g1624 1030 SFLD C1.7: P-type atpase like 434 812 - -
Sed08g1624 1030 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Sed08g1624 1030 PRINTS P-type cation-transporting ATPase superfamily signature 759 778 - -
Sed08g1624 1030 PRINTS P-type cation-transporting ATPase superfamily signature 783 795 - -
Sed08g1624 1030 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Sed08g1624 1030 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Sed08g1624 1030 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Sed08g1624 1030 Gene3D - 140 334 - -
Sed08g1624 1030 PANTHER CATION TRANSPORTING ATPASE 98 1017 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed08g1624 1030 PRINTS H+-transporting ATPase (proton pump) signature 759 775 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1624 1030 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1624 1030 PRINTS H+-transporting ATPase (proton pump) signature 791 816 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1624 1030 SUPERFAMILY HAD-like 450 863 IPR036412 -
Sed08g1624 1030 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Sed08g1624 1030 Gene3D - 165 1011 - -
Sed08g1624 1030 Pfam E1-E2 ATPase 235 430 - -
Sed08g1624 1030 Coils Coil 224 244 - -
Sed08g1624 1030 FunFam Calcium-transporting ATPase 776 1018 - -
Sed08g1624 1030 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 663 IPR023299 GO:0000166(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2093 Sed-Chr5:34089071 Sed08g1624 Sed-Chr8:31373094 7.40E-100 dispersed
Sed05g2094 Sed-Chr5:34097159 Sed08g1624 Sed-Chr8:31373094 6.00E-102 dispersed
Sed07g0449 Sed-Chr7:3404556 Sed08g1624 Sed-Chr8:31373094 0.00E+00 dispersed
Sed07g0450 Sed-Chr7:3404556 Sed08g1624 Sed-Chr8:31373094 4.70E-294 dispersed
Sed08g1624 Sed-Chr8:31373094 Sed12g1100 Sed-Chr12:7159031 3.40E-233 dispersed
Sed08g1624 Sed-Chr8:31373094 Sed11g0591 Sed-Chr11:6913248 2.20E-280 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1624 K01537 - csv:101218531 1566.21