Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g1624 | ATGGCGTTGAGGAGCAGGAAAAGCAACGAGATCGTTGAAGCAGCACTTGATCGTGATCAAGCACACTCGCCAATGGCGAAAACTCACAAACGCCGCTGGAAGATGGCCTTCGCCGCCATTTCTTTCACCAGAGCTCTCATCTCTCTGTCCAGGAAACTCGCCGGCCCTAAATCCGCCGTCCTGTTGCGCTCCATTTCGTACATTGCGGTCGATGTGCCGCCGAGTGATGATTCCAAGGGTTCCGGCGAGTTTCCGTGCATGCCGGCTTTCTCCGGCGAAAATCAGAAATTAGTTCTCAGCGAAATGGTGAGGGAGAAGAGTATTGAGCGTTTGAATCGATTTGGACGCGTTCGCGGTCTGGCGGAGTTTCTCAAAACGGACGCTCATGGCGGAATCTGTGCGACGGAGGATGATTTAGTTTACAGGAAGAACGGATTTGGAACGAATACTTACTCGAAGGTTCCTGGTAGAAATTTCTTGAGCTTCGTGGTGGAAGCGTTTAACGATACTACGATTGTTATTCTTTTGATCTGTGCGGTGCTTTCGTTGGGATTTGGTATCAAACAGCACGGTTGGGACGACGGATGGTACGACGGCGGCAGCATTGTCATCGCTATATTTCTTGTGGTTATCGTCTCCGCTGGGAGTAATTTCAAGCAATCGAGACAGTTCGAGAAGCTTTCGAACGAAAGAGACGATATCAAAATCGAGGTCACCAGAGCCGATCGACGCCAACCTGTGTCGATTTTCGAACTCCTCGTCGGTGACATTGTGCATTTGAAGATTGGAGATCAGATTCCGGCGGATGGAGTGTTCGTCGACGGATATTCGCTGAAAATCGACGAATCGAGCATGACTGGAGAGAGCGAACGCGTTGAGGTAAATCATGAGATTAATCCGTTTTTGTTATCAGGAACGAAAGTGAGCGATGGATTTGGTGTGATGATGGTGACTTCTGTTGGAATGAACACGGCGTGGGGAGAGATGATGAGTTCAATTAGAAGGGAAGTTAATGAGGAAACTCCATTGCAAGCTCGTTTGAACAAGATGACCGCTGTTATCGGGAAGCTAGGGCTCACGGTCGCCGTGCTGGTGCTTCTTGTTCTGCTGGTTCGCTATTTCACTGGGAGTACCCGCGAGTTCAATGGACGCAAGACGAGGTTCAATGATGTGATGAATGCTGTTCTCGGCATGGTTGCGGCTGCTGTTACGATCGTCGTCGTGGCGATTCCGGAAGGTTTGCCTCTTGCTGTTACTTTAACTTTAGCTTACTCCATGAGAAAAATGATGGCAGATAATGCAATGGTTAGGAAACTATCTGCTTGCGAGACTATGGGCTCGGCCACTACTATTTGTACTGATAAAACTGGTACTCTTACTTTGAATGAGATGAAAGTTACTGAGTTTTGGATTGGAGAAAATGAGATTATTGGTAGAGATAACTCCAATTCAAGGATTGGGAGTAATGTTGTTGAATTACTGCACCAAGCAGTTGGATTGAATACAACTGGTAGTGTTCAAAGATCAAGTTCTTCATTGCCTGTAGAAATATTCGGGAGCCCGACCGAGAAAGCTATACTTTCGTGGGCAGTATTTGACATGGAATTGAACCTAGATGAACTGAAGAAACAACATGAGGTAATCCAGGTAGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGAGTTTCGACGAGACGATGTGGCGAAAGGCTTGTTAGTACACACTGGAAAGGAGCAGCAGAGATGATATTAGCCATGTGCTCACATTGTTACGAGAAACAAGGAACAGTTAAAGCCATTGATGGTGAAGCAAGAAGACGGTTGACCGCAATAATCACAACTATGGCAGCAAAAAGTCTGCGTTGCATAGCTTTTGCCCACAAGTCGAACGAAGGCGACGAAAATCAAGAAGATCTTGAGAAACTCAACGAATCGGGATTGACATTACTGGGAATAGTTGGATTGAAGGATCCTTGCAGGCCAGGAGTCAGAGAAGCCGTGGAATCATGCAGAGCTGCTGGAGTGAACGTCAAAATGGTGACAGGAGATAATCTGCACACAGCAACAGCTATAGCAATTGAATGCGGGATACTAGATCTCAACGACACTTCGAATATTCGCGATGCTGTGGTCGAGGGAGTACAATTCAGAAACTACACACCAGAGGAGAGGCTAGAAAAGATTGGGAACATCCGAGTTATGGCTCGATCTTCCCCATTTGACAAGCTTCTGATGGTGCAATGCTTGAAGAGTCAAGGCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCACCTGCTCTTCATGAGGCAGACATTGGCCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAAGAGAGCTCCGACATCGTCATCTTGGACGATAACTTCACATCGGTTGTCACCGTCTTGAAATGGGGAAGATGTGTTTACAACAACATTCAGAAGTTCATTCAATTTCAGCTCACTGTGAATGTTGCAGCACTCATCGTAAACTTCATTGCGGCCGTCTCCTCGGGTAAAGTCCCTTTAACAGCAGTGCAGCTACTATGGGTGAACCTCATCATGGACACCATGGGAGCTTTAGCCTTAGCCACAGAGCTACCCACCAACGATCTCATGCTGAAAACGCCGGTCGGTCGATCGGAGCCGTTGGTGACGAAAGTCATGTGGAGGAACCTCATTGCTCAGGCTGTGTATCAGGTGACAATCTTGCTGGTTTTGGAATTCAAAGGAACATCCATCTTCAATGTGAATGAAAAGGTTAAGAGCACACTGATCTTCAACACTTTTGTTCTGTGTCAAATCTTCAATGAATTCAATGCAAGGAAGTTGGAGAAGAAGAATGTATTTCAAGGGCTACACAAAAGCAAGCTCTTTTTGGCAATCATTATAGTAACCATAGTTTTTCAAGTGATAATGGTTGAGCTCTTGGGAAGATTTGCAAATACAGAAAGGTTGAATTGGGGCCAGTGGGGAGCATGTATTGGGATTGCAGCTTTGTCTTGGCCAATTGGATGGCTCTCAAAGTTAATTCCAGTTTCTGCCAGGCACTTTCCAATTTGGAGAAGAAATTCTGCACCATAA | 3093 | 46.27 | MALRSRKSNEIVEAALDRDQAHSPMAKTHKRRWKMAFAAISFTRALISLSRKLAGPKSAVLLRSISYIAVDVPPSDDSKGSGEFPCMPAFSGENQKLVLSEMVREKSIERLNRFGRVRGLAEFLKTDAHGGICATEDDLVYRKNGFGTNTYSKVPGRNFLSFVVEAFNDTTIVILLICAVLSLGFGIKQHGWDDGWYDGGSIVIAIFLVVIVSAGSNFKQSRQFEKLSNERDDIKIEVTRADRRQPVSIFELLVGDIVHLKIGDQIPADGVFVDGYSLKIDESSMTGESERVEVNHEINPFLLSGTKVSDGFGVMMVTSVGMNTAWGEMMSSIRREVNEETPLQARLNKMTAVIGKLGLTVAVLVLLVLLVRYFTGSTREFNGRKTRFNDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMRKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGENEIIGRDNSNSRIGSNVVELLHQAVGLNTTGSVQRSSSSLPVEIFGSPTEKAILSWAVFDMELNLDELKKQHEVIQVETFSSEKKRSGVSTRRCGERLVSTHWKGAAEMILAMCSHCYEKQGTVKAIDGEARRRLTAIITTMAAKSLRCIAFAHKSNEGDENQEDLEKLNESGLTLLGIVGLKDPCRPGVREAVESCRAAGVNVKMVTGDNLHTATAIAIECGILDLNDTSNIRDAVVEGVQFRNYTPEERLEKIGNIRVMARSSPFDKLLMVQCLKSQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALIVNFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMLKTPVGRSEPLVTKVMWRNLIAQAVYQVTILLVLEFKGTSIFNVNEKVKSTLIFNTFVLCQIFNEFNARKLEKKNVFQGLHKSKLFLAIIIVTIVFQVIMVELLGRFANTERLNWGQWGACIGIAALSWPIGWLSKLIPVSARHFPIWRRNSAP | 1030 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 31373094 | 31376220 | + | Sed0013153.1 | Sed08g1624 | 723400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g1624 | 1030 | SFLD | p-type atpase | 434 | 812 | IPR044492 | - | |
| Sed08g1624 | 1030 | Gene3D | - | 462 | 658 | IPR023299 | GO:0000166(InterPro) | |
| Sed08g1624 | 1030 | FunFam | Calcium-transporting ATPase | 214 | 334 | - | - | |
| Sed08g1624 | 1030 | NCBIfam | HAD-IC family P-type ATPase | 730 | 841 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g1624 | 1030 | NCBIfam | HAD-IC family P-type ATPase | 396 | 477 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g1624 | 1030 | Gene3D | - | 449 | 804 | IPR023214 | - | |
| Sed08g1624 | 1030 | FunFam | Calcium-transporting ATPase | 653 | 804 | - | - | |
| Sed08g1624 | 1030 | SUPERFAMILY | Calcium ATPase, transduction domain A | 236 | 332 | IPR008250 | - | |
| Sed08g1624 | 1030 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 454 | 460 | IPR018303 | - | |
| Sed08g1624 | 1030 | Pfam | Cation transporting ATPase, C-terminus | 844 | 1014 | IPR006068 | - | |
| Sed08g1624 | 1030 | Pfam | haloacid dehalogenase-like hydrolase | 450 | 773 | - | - | |
| Sed08g1624 | 1030 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 106 | 1016 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Sed08g1624 | 1030 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1017 | IPR023298 | - | |
| Sed08g1624 | 1030 | SFLD | C1.7: P-type atpase like | 434 | 812 | - | - | |
| Sed08g1624 | 1030 | PRINTS | P-type cation-transporting ATPase superfamily signature | 651 | 662 | - | - | |
| Sed08g1624 | 1030 | PRINTS | P-type cation-transporting ATPase superfamily signature | 759 | 778 | - | - | |
| Sed08g1624 | 1030 | PRINTS | P-type cation-transporting ATPase superfamily signature | 783 | 795 | - | - | |
| Sed08g1624 | 1030 | PRINTS | P-type cation-transporting ATPase superfamily signature | 452 | 466 | - | - | |
| Sed08g1624 | 1030 | PRINTS | P-type cation-transporting ATPase superfamily signature | 673 | 683 | - | - | |
| Sed08g1624 | 1030 | PRINTS | P-type cation-transporting ATPase superfamily signature | 281 | 295 | - | - | |
| Sed08g1624 | 1030 | Gene3D | - | 140 | 334 | - | - | |
| Sed08g1624 | 1030 | PANTHER | CATION TRANSPORTING ATPASE | 98 | 1017 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed08g1624 | 1030 | PRINTS | H+-transporting ATPase (proton pump) signature | 759 | 775 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g1624 | 1030 | PRINTS | H+-transporting ATPase (proton pump) signature | 608 | 626 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g1624 | 1030 | PRINTS | H+-transporting ATPase (proton pump) signature | 791 | 816 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g1624 | 1030 | SUPERFAMILY | HAD-like | 450 | 863 | IPR036412 | - | |
| Sed08g1624 | 1030 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 182 | IPR004014 | - | |
| Sed08g1624 | 1030 | Gene3D | - | 165 | 1011 | - | - | |
| Sed08g1624 | 1030 | Pfam | E1-E2 ATPase | 235 | 430 | - | - | |
| Sed08g1624 | 1030 | Coils | Coil | 224 | 244 | - | - | |
| Sed08g1624 | 1030 | FunFam | Calcium-transporting ATPase | 776 | 1018 | - | - | |
| Sed08g1624 | 1030 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 458 | 663 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g2093 | Sed-Chr5:34089071 | Sed08g1624 | Sed-Chr8:31373094 | 7.40E-100 | dispersed | |
| Sed05g2094 | Sed-Chr5:34097159 | Sed08g1624 | Sed-Chr8:31373094 | 6.00E-102 | dispersed | |
| Sed07g0449 | Sed-Chr7:3404556 | Sed08g1624 | Sed-Chr8:31373094 | 0.00E+00 | dispersed | |
| Sed07g0450 | Sed-Chr7:3404556 | Sed08g1624 | Sed-Chr8:31373094 | 4.70E-294 | dispersed | |
| Sed08g1624 | Sed-Chr8:31373094 | Sed12g1100 | Sed-Chr12:7159031 | 3.40E-233 | dispersed | |
| Sed08g1624 | Sed-Chr8:31373094 | Sed11g0591 | Sed-Chr11:6913248 | 2.20E-280 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g1624 | K01537 | - | csv:101218531 | 1566.21 |