Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1632 ATGGATGGTTTCTCAGATCTTGAGCCTGATTCTTGTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTTTGGGAAAAGGAGCTTCAAAAACAGTTTACAGAGCATTTGATGAGTATGAAGGAATTGAGGTAGCTTGGAATCAAGTGAAACTGTATGATTTCTTGCAAAGTCCTGAAGATCTAGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAACATAGAAATATTATGAAATTCTATACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTTAGACAGTATAGGCTTAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTAAGAGGGCTTCATTATTTGCATAACCATGAGCCTCCTGTAATTCATAGAGATCTCAAATGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTTAGAAAATCTCATGTTGATCATTGTGTAGGGACACCAGAGTTTATGGCTCCAGAAGTGTATGCAGAGGCATATAACGAATTAGTCGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCGTATAGCGAATGCACTCATCCAGCTCAGATCTACAAGAAAGTCGTATCCGGGAAAAAACCGGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGCAAGTTCATCGATAAGTGTTTGGCATCAGTTTCATTTAGGCTTTCAGCAGCAGAGCTTTTGAGTGACCCTTTTCTTCAAGTTGATAATGGCGAATATGATCTACGACCTGTGGATTACGGGAGAGGATTGGATGATGTTTGCCCTCTTATACGACAGCCTTATCTACAACATCAAAGAAGTGACAGCTCTTTTTGTAATGGATATCCAAATGATTATAGTTTTGAAGCTTCAAGTGATTCTGGTTATCATCACATTGATAATGAAACCAATGGAATTGAACTTTTTGAGTATTGTGAAGGTGACCATTGTGAAAATGTTGATATTAGCATTAAAGGGAAGATGAGAGAAGGTGGTGCCATCTTTTTAAGACTGAGAATTGCAGATAAAGAAGGGCGTATGAGGAACATTTATTTCCCATTTGATGTCGAGATGGACACAGCATTAAGTGTTGCAACAGAAATGGTTGCAGAGCTTGATATAACTGATCAAGATGTGACGAGAATTGCTGATATGATCGATGGAGAAATTGCTTCGTTGGTGCCTGAATGGAGGTCGGGTCCCGGAATTGAGGAAATGCCCCCCTTTGCAAATCTAAGCTATTGTCATAACTGTGCTCCTACTTCTTACAACACTGCTTCAAATGGTGTTTTGTTGAGAAATCTTGATGGAAAGAACTCAGAAATAGCTCAATGCTGTGGACATCGATATGCTTCAGTGCACGGTCGTTTTGAGGAGATAATGTATGAAGAGCCCGAGCATCATCCGGTAGAGGGTGCACAAAATATATCGATCCATTCCAATTGTCTGAATTACCCTGAAGTATGGGGGCGTCACGAAAGCCGTGAACTTAGTTCAATGAGCTCAAGGCACAGCCATTCGGATGAAGATTATGAGAAAACAGATCGACCTCCTGCAGTCACGGACACAAAAGAAGTGATAATGGAAAGTAAAGCTGATCTTAATACGAGAACATCGCTTTGGGACCTAATGAATTCTCTTTCTTTCTCAGAAACCCCTTCATTATATGGATCTTCAAATATCTATGAAAATGATGCTCAGCAAGAAATGAGATGGATCAAGGCAAAGTACCAAATGGAACTAAGCAAGCTCAGAGATCAACAGTTAAGGGCTTTGTCAAAATCATCAAGTTATGAAGACAGGCAACAACAAATGAAAAATGGGACATTGGAAGGCAACCACAACCAAATCCTCTACAGCCCTGCTCGAGACACGAACGGAAGTAGTACCGATAGCCATGTTTACATCAGTAATAGCTGTTACAGTTCAGATCCGAAAATAGCCCGAAATCGCAAGGCTGTGGAATCCGCTATTGTGGAGAATTTAGTCACTGCTAAAAATGCCTGCACTGGTTCATTGCTTCCAAGCTCCCTTCATAGAACAATCTCCCTCCCAGTTGATGCTGTTCATATATAA 2202 39.92 MDGFSDLEPDSCEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHNHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHVDHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRKFIDKCLASVSFRLSAAELLSDPFLQVDNGEYDLRPVDYGRGLDDVCPLIRQPYLQHQRSDSSFCNGYPNDYSFEASSDSGYHHIDNETNGIELFEYCEGDHCENVDISIKGKMREGGAIFLRLRIADKEGRMRNIYFPFDVEMDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRSGPGIEEMPPFANLSYCHNCAPTSYNTASNGVLLRNLDGKNSEIAQCCGHRYASVHGRFEEIMYEEPEHHPVEGAQNISIHSNCLNYPEVWGRHESRELSSMSSRHSHSDEDYEKTDRPPAVTDTKEVIMESKADLNTRTSLWDLMNSLSFSETPSLYGSSNIYENDAQQEMRWIKAKYQMELSKLRDQQLRALSKSSSYEDRQQQMKNGTLEGNHNQILYSPARDTNGSSTDSHVYISNSCYSSDPKIARNRKAVESAIVENLVTAKNACTGSLLPSSLHRTISLPVDAVHI 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31481504 31485369 + Sed0001008.1 Sed08g1632 723408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1632 733 Gene3D - 374 440 - -
Sed08g1632 733 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1632 733 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Sed08g1632 733 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Sed08g1632 733 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1632 733 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Sed08g1632 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1632 733 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1632 733 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Sed08g1632 733 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 432 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed08g1632 733 CDD STKc_WNK 22 281 - -
Sed08g1632 733 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 633 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed08g1632 733 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Sed08g1632 733 MobiDBLite consensus disorder prediction 541 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1621 Sed-Chr1:11779009 Sed08g1632 Sed-Chr8:31481504 2.60E-140 dispersed
Sed05g0673 Sed-Chr5:5034761 Sed08g1632 Sed-Chr8:31481504 7.80E-120 dispersed
Sed08g1632 Sed-Chr8:31481504 Sed11g0251 Sed-Chr11:2244660 0.00E+00 dispersed
Sed08g1632 Sed-Chr8:31481504 Sed04g1904 Sed-Chr4:33788917 1.10E-214 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79638 PF00069 Pkinase 4.70E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1632 K08867 - csv:101219552 1249.96