Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1644 ATGGGATGTATAAATAGCCGAGAAGTAGCTTCTAGAAACTTAGCAGATTCCGAGGTTAAGAAGGAGAAGAGCTCTGAATGTGGTGATGATTTGGAAAGAAATGAAGCTGATGTGGATGTTGTTGTTGGTGTTACTAAGAAGGAAGAGCATGGCCATGGGGATAAGCCTTTGACAAAAGAGCAGAGAAGAAAGTTGAAACCTAACCCTAGATTGAGTAATTTGCCAAAGCAATCACAAGGGGAGCAAGTGGCGGCTGGATGGCCGCCTTGGCTTACAGCAGTTTGTGGAGAGGCACTCAGTGGTTGGGTTCCAAGAAAGGCTGATACATTTGAGAAAATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATACAATGACCGGTAAAATTGTTGCACTGAAGAAGGTTCGCTTTGACAACCTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAAATTCTCATTTTGCGACGCCTTGACCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTTCTGCAAACCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGAAACAACTGCTATCAGGACTTGAGCACTGTCACAGCCATATGGTGCTTCATCGTGATATTAAGGGTTCTAATCTTCTTATTAATGGTGAAGGGATGCTTAAGATTGCTGACTTTGGTCTAGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCCGAGCTTCTACTTGGTGCAACTCATTATGGTGTTGGGATCGACCTTTGGAGTGCAGGTTGTATTCTAGCAGAGTTATTAGCTGAGAAGCCCATAATGCCTGGCCGTACAGAGGTTGAGCAACTACACAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAATATTTGAAGAGAGCAAAGTTACCCAATGCAGCCTTATTTAGGCCCCGAGAACCTTATAAGAGATGTATAAAAGATACTTATAAGGATTTCCCACCATCGTCATTTCCTCTTATCGATACACTTCTTGCGATTGATCCTGCTGAGAGAATGACTGCTACAGATGCATTAAAGAGCGAGTTCTTCACTACGGAACCTTATGCGTGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCAAGAAGACAAAGAGCGGCAAATAAATTGCAGAATGATCATGGGAAGAAGGCACGCACACGTAACCGTGCTGGTAGGGCCATTCCTATTCAAGGAGCCAATGCAGAACTCCAATCAAATGTCAATAGACGGCGTTTAATCACGCACGCAAATGCGAAGAGCAAGAGCGAAAAGTTCCCTCCTCCGCATCAGGACGGGTCATTAGGATATTCACGTCATATCGATCCAGCTGCTGTTCCTTCTGATGTTCCATTTAGTTCATCATCGTTCGGCTATCCAAACGAATTTGGAGCCTGGTCCGGACCATTGGTTGAGTCTTCTGACATTGGTGCTCAAAGGCAGAAGCATTTGGGAGGTGATGCAAGAGAACAAAAATCAAGCCAATCCTCAGTTAAAGGGAAAAAAGCAGCATAA 1683 43.37 MGCINSREVASRNLADSEVKKEKSSECGDDLERNEADVDVVVGVTKKEEHGHGDKPLTKEQRRKLKPNPRLSNLPKQSQGEQVAAGWPPWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLSANPSIKFTEAQVKCFMKQLLSGLEHCHSHMVLHRDIKGSNLLINGEGMLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAEKPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIKDTYKDFPPSSFPLIDTLLAIDPAERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAANKLQNDHGKKARTRNRAGRAIPIQGANAELQSNVNRRRLITHANAKSKSEKFPPPHQDGSLGYSRHIDPAAVPSDVPFSSSSFGYPNEFGAWSGPLVESSDIGAQRQKHLGGDAREQKSSQSSVKGKKAA 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31598316 31604894 + Sed0001120.2 Sed08g1644 723420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1644 560 MobiDBLite consensus disorder prediction 401 560 - -
Sed08g1644 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1644 560 MobiDBLite consensus disorder prediction 1 84 - -
Sed08g1644 560 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Sed08g1644 560 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524(InterPro)
Sed08g1644 560 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1644 560 SMART serkin_6 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1644 560 MobiDBLite consensus disorder prediction 546 560 - -
Sed08g1644 560 MobiDBLite consensus disorder prediction 456 470 - -
Sed08g1644 560 Gene3D Transferase(Phosphotransferase) domain 1 193 434 - -
Sed08g1644 560 MobiDBLite consensus disorder prediction 412 441 - -
Sed08g1644 560 PANTHER CELL DIVISION PROTEIN KINASE 109 394 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed08g1644 560 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Sed08g1644 560 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1644 560 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Sed08g1644 560 CDD STKc_CDK9_like 110 394 - -
Sed08g1644 560 SUPERFAMILY Protein kinase-like (PK-like) 104 399 IPR011009 -
Sed08g1644 560 MobiDBLite consensus disorder prediction 13 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1644 Sed-Chr8:31598316 Sed12g0863 Sed-Chr12:5354875 1.90E-214 dispersed
Sed08g1643 Sed-Chr8:31598316 Sed08g1644 Sed-Chr8:31598316 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79640 PF00069 Pkinase 6.80E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1644 K08819 - csv:101217497 986.482