Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g1650 | ATGGTTGCTCAGAGAAAGGGAACATCGCGGGCTTCCGAGGACCACGAGGAACTGGCAAGAGTTTCGTTGCAGGCTGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTTACCCTATAACGCTTGAACGCCCGAAGGTATTATTGCCGTTGGTAAATGTCCCAATGATTAATTATACTTTATCTTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGTTGTGCTAATTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCCGTTAGTGCTGGAGATGCCTTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTTCTTATAACTGGAGACACCATAAGCAACATGTCACTTACAAAAGCTCTTCAAGAACACAAAGAGAGAAAGAAGAAAGATAGTAATGCTGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAGCTATTTATGGCAATTGATCATAATACCAAGCAGCTCGTGTACTATGAGGATAAGGCTGACAATTCAAAAGGAATTATACATCTTGACAAGTCATTGTTTATGGACAATCCTTCCATATCACTCCATAATGACATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGTCTATTTACCGACAATTTTGACTACCAACATCTGCGCCGTCATTTTGTCAAGGGTTTGCTTTTAGATGATATCATGGGTTACAAGATTTATACACAAGAAATTCGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCAGATGTTAAATTTTTTGGCAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATAGAGCTTCAGAAATACTGCAGGCACGTTCGGCACAGGTTGGTCCATTTACTGTTATTGGGGATAACAGCAAAATTGGTGGCAACACCAAAATTACAAATTCAATTATTGGGCAAGGTTGTAGTATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAATGTCACCATTGAAGATGGCTGTAAACTTAATCATGCTATCGTATGTGATGGAGTTATTATAAAATCAGGAGCAGAACTGGAACCTGGTGCAATTTTGTCTTTCAAGGTTGTTGTAGGGGACCAGTTTGTTGTTCCATCATATTCAAAAGTATCTTTGTTTCAACAGCCAACCAATCAAGATAGCGATGAAGAGCTGGAATATGCAGACAATAGCAGCGGCATTCAAGAATCTGCAGATACTACGGACAAGTCAAATAGTGAACAGATGTCCAAATCGCCGGAAATGCAAGGCTGGCCTACATCTGAGCTAGGTAAGGGAGGTAAAGGATATGTATGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCTGATAAACTTGAGAAAGCTCTGCAAGCGGCAGATGATGAGCTGGAGTTAACTCATGATGCTAATGTTCTGCCACCTTCAGGGGAGTTGAAATCCGACTCAAATTTATCCGATGGTGATGATAACGAAGACTCTAGAGATGACGCCATCCACTTTGAGAAGGAGGTTGAAGCAACGTTCCTTAGGGCTGTGCATGAAAATATTAAAGTGGAAAATGTAATTTTGGAAGTTAACTCGTTGAGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCAATATTTTATTCTCTGATGAAATTTGCCTTGGATTCTTCACATGGTTCATCTAGTGAACTACTGCAAAATACGACAAATATAATTACGAAATGGAAGAAACTTTTGAAGTACTACTTAACTGACATGGATGAAGAGATTGAAGTGATTTTAAAATTTGAAGAGATGTGTCTGGAATCTGCCAAGGAATTTACACCACATTTTACCAAGATTTTGTGTCATCTATATGACCAAGATATCATTCAAGAAGATGCTATTCTAAGGTGGGATGACGAGAAAAAAGAAGCTGATGATTCGGACAAACTTTTTGTTAAGCAGGCCGAGAAATTCATCGAGTGGTTAAGAGTTGCATCAGAAGAGGAAGATGAAGAAGAGGAGGAATAG | 2193 | 39.85 | MVAQRKGTSRASEDHEELARVSLQAVLLADSFTTKFYPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSVSAGDALRLIYERNVIHGDFVLITGDTISNMSLTKALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLVYYEDKADNSKGIIHLDKSLFMDNPSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTQEIRSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGGNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLNHAIVCDGVIIKSGAELEPGAILSFKVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIQESADTTDKSNSEQMSKSPEMQGWPTSELGKGGKGYVWSICEGSVEEEWRHSVAPIPADKLEKALQAADDELELTHDANVLPPSGELKSDSNLSDGDDNEDSRDDAIHFEKEVEATFLRAVHENIKVENVILEVNSLRLSYNKVAADCAGAIFYSLMKFALDSSHGSSSELLQNTTNIITKWKKLLKYYLTDMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQDIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEDEEEEE | 730 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 31630264 | 31651488 | - | Sed0004488.1 | Sed08g1650 | 723426 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g1650 | 730 | FunFam | Trimeric LpxA-like enzyme | 316 | 449 | - | - | |
| Sed08g1650 | 730 | Pfam | Nucleotidyl transferase | 25 | 168 | IPR005835 | GO:0009058(InterPro) | |
| Sed08g1650 | 730 | FunFam | Translation initiation factor eIF-2B epsilon subunit | 552 | 728 | - | - | |
| Sed08g1650 | 730 | ProSiteProfiles | W2 domain profile. | 556 | 727 | IPR003307 | GO:0005515(InterPro) | |
| Sed08g1650 | 730 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 8 | 303 | IPR029044 | - | |
| Sed08g1650 | 730 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 22 | 369 | IPR029044 | - | |
| Sed08g1650 | 730 | Pfam | Bacterial transferase hexapeptide (six repeats) | 340 | 373 | IPR001451 | - | |
| Sed08g1650 | 730 | Gene3D | - | 549 | 728 | - | - | |
| Sed08g1650 | 730 | MobiDBLite | consensus disorder prediction | 449 | 476 | - | - | |
| Sed08g1650 | 730 | SUPERFAMILY | Trimeric LpxA-like enzymes | 269 | 429 | IPR011004 | - | |
| Sed08g1650 | 730 | CDD | W2_eIF2B_epsilon | 557 | 721 | IPR044123 | GO:0005085(InterPro)|GO:0031369(InterPro) | |
| Sed08g1650 | 730 | MobiDBLite | consensus disorder prediction | 529 | 556 | - | - | |
| Sed08g1650 | 730 | CDD | LbH_eIF2B_epsilon | 341 | 419 | - | - | |
| Sed08g1650 | 730 | Coils | Coil | 511 | 531 | - | - | |
| Sed08g1650 | 730 | SMART | 542_3 | 636 | 723 | IPR003307 | GO:0005515(InterPro) | |
| Sed08g1650 | 730 | MobiDBLite | consensus disorder prediction | 434 | 482 | - | - | |
| Sed08g1650 | 730 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 9 | 730 | IPR051956 | GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0031369(PANTHER) | |
| Sed08g1650 | 730 | SUPERFAMILY | ARM repeat | 562 | 718 | IPR016024 | - | |
| Sed08g1650 | 730 | CDD | eIF-2B_epsilon_N | 23 | 239 | IPR035543 | - | |
| Sed08g1650 | 730 | FunFam | Translation initiation factor eIF-2B subunit epsilon | 12 | 303 | - | - | |
| Sed08g1650 | 730 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 648 | 727 | IPR003307 | GO:0005515(InterPro) | |
| Sed08g1650 | 730 | Gene3D | Hexapeptide repeat proteins | 319 | 428 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g1650 | K03240 | - | csv:101217025 | 1299.26 |