Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1659 ATGTTGAGATTCCATGTGGGTGGGAAGGTGGTCGAGAGAGTTGACTTGTTGAGGAAGAAACACTGGACATGGCGCTTGGATCTCTGGCCATTCGCCATTCTGTATGTCGCCTGGCTTGCCCTCGTTGTTCCCAGTATAGACTTTGGAGATGCTTTCATTGTTTTCGGTGGGCTTGTGGCTCTTCATGTTCTCGTCTTGCTTTTCACTGCTTGGTCCGTTGATTTCAAATGCTTTGTCCAGTTCAGTCAGGTTAATGATATTTATCAAGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCAGGCTCGAAAGAAATTGTTTTGCTTCATTTTCGTAAGCTTCTGGCCGGTTCTGCATCTGCTGCGGATATTGAGGAGATCTACTTTGATTTCAGAAAACAACGATTTATTTATTCAAAGGAAAAGGAAACTTTCTGCAAGCTTCCTTATCCAACAAAGGAAACTTTTGGTCATTATCTAAAGAGTACTGGTTATGGCTCCGAGCCTAAGGTTGTAGCTGCTGTTGAAAACTGGGGTCGCAATATATTCGAGTATCCACAACCTACTTTCCAGAAATTAATGAAAGAGCAGTGTATGGAGCCATTTTTTGTGTTTCAGGTTTTTTGTGTGGGGCTGTGGTGTTTGGACGAGTATTGGTATTACAGCCTGTTTACTCTGTTTATGCTGTTTATGTTTGAGTCTACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTAAGACGTGTTAGAGTCGATACTCAGACCTTAATGGTGCATCGGTGTGGAAAGTGGGTGAAGCTACCAGGAACTGAACTTTTACCTGGAGATGTTGTCTCCATTGGGCGTGATTCTGGTCAGAGTGGTGAAGATAAATCTGTACCTGCTGATATGCTTATACTGGCCGGAAATGCTATCGTTAATGAAGCTATTCTTACTGGGGAATCTACACCTCAATGGAAGGTTTCAATATCTGGGAGAGGAACTGAGGAGAAGCTATCGGCTAAGAGAGACAAAAGTCACATGTTATTTGGTGGGACCAAAATATTGCAGCATACTCCGGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGAGAACTGGATTTGAAACAAGTCAGGGGAAACTACTGCGGACAATTTTGTTTTCTACAGAGAGGGTGACAGCTAACAGTTGGGAAAGTGGCCTATTTATTTTGTTCTTGGTTGTATTTGCAGTTATAGCTGCTGGTTACGTTCTTGTAAAGGGGCTGGAAGATCCCACGAGAAGCAAGTACAAACTTTTCCTTAGTTGCTCACTTATAATCACTTCTGTTATTCCTCCTGAACTACCAATGGAACTGTCAATAGCCGTTAATACATCTTTAATTGCTCTGGCACGTCGTGGAATATTTTGTACAGAGCCTTTCCGAATACCATTTGCTGGAAAGGTTGATGTTTGCTGTTTCGATAAAACTGGAACGTTGACATCTGATGACATGGAGTTCCGAGGAGTAGTTGGGTTGGGTGACAAGGAGGATTTGGAAACTGACATGACCAGTGTGTCACTTCGCACAGTTGAAATCTTGGCTTCTTGCCATGCATTGGTGATTGTGGACAGCAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCACTCAAGGGAGTTGATTGGACTTACAAATCTGATGAGAAAGCCATTCCTAGGAAGGGAAGTGGCCATGCTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTACGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCTGAAACCATCCAGGAGAGGCTCACTGATGTACCTTCCTTTTATGTTGAAACGTTTAAGAAATTTACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTATAAATCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGATAGGGACATGGTGGAGAGTGACCTTACATTTGCTGGTTTTGCGGTGTTCAATTGTCCTATTAGAGCAGATTCAGCTACAGTATTATCTGAGCTTAAAGGATCATCCCATGACTTGGTAATGATTACTGGTGACCAAGCTTTAACAGCGTGCCACGTAGCTAGCCAAGTTCATATTACCTCAAAGCAGATTTTAATTCTCAATTCAAAGAAGGGAACTGAAGAATATGAATGGCTCTCCCCAGATGAGTTACAGACAGTTCCCTACAGAGAGAAAGAGGTGGGAGATTTATCGGAGACATATGATCTTTGTATTGGAGGAGACTGCATCGGAATGCTACAACGCACATCCACTGTGCTGGATGTTATTCCATACGTTAAGGTCTTTGCAAGAGTTGCTCCAGAGCAGAAAGAACTCATATTGACCACGTTCAAAACAGTTGGAAGAATAACGTTGATGTGCGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGTGACTCTTCTTCAGAAGCATCCAAAGATGAGGCTGTACGGTCTGCAAAGTCAAAGAAATCTAAGCCTTCATCCGAATCATCAGGAAAAGCACTTGTAAATGGAGAAGGTTCTTCAAAAAGCAAAGTTGTTGCAAAACTGGATTCTTCTGCTGAGCAAGCTAGTAACCGTCCACGGACACCTGCCGAGATACAAAGACAGAAGCTGAAGAAAATGATGGACGAGTTAAACGATGAGGGTGATGGGCGCTCCGCCCCTATTGTCAAGCTGGGGGATGCATCAATGGCATCCCCATTCACAGCAAAGCATGCTTCTGTTGCCCCTACGACCGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTCCAGATGTTTAAAATACTCGGTCTCAACTGCCTCGCTACTGCCTATGTACTTAGTGTTATGTATTTGGATGGTGTAAAGCTTGGCGATATTCAAGCGACAATCAGCGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACACGCACGCCCCCTTCCGACTCTTTCAGCTGAACGGCCCCATCCACACATCTTTTGCTCTTATGTTCTCCTTTCTCTGCTAGGCCAATTTGCAATCCACTTATTGTTCTTGATTTCTTCAGTGAACGAAGCCGAAAAGCACATGCCTGATGAATGTATAGAGCCAGACTCCAATTTTCATCCCAACTTGGTTAACACGGTTTCGTACATGGTAAGCATGATGCTTCAGGTAGCTACCTTTGCTGTAAACTACATGGGTCATCCCTTCAACCAAAGTGTATCCGAAAACAAACCGTTCTTATACGCTCTCTTGGCTGCGGTCGGCTTCTTCACAGTCATTACCTCTGATTTGTTCAGAGACCTGAATGACTGGCTGAAACTGGTTCCATTGCCTGTGGGATTGAGGGATAAGCTTCTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATGGATGTTCCCGGGTAAAATCCCGGCGTGGCGACAACGACAACGACGGGTAGCGGCTAATCTGGAGAAGAAACAGGTATGA 3576 44.3 MLRFHVGGKVVERVDLLRKKHWTWRLDLWPFAILYVAWLALVVPSIDFGDAFIVFGGLVALHVLVLLFTAWSVDFKCFVQFSQVNDIYQADTCKIVPAKFSGSKEIVLLHFRKLLAGSASAADIEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGHYLKSTGYGSEPKVVAAVENWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRDSGQSGEDKSVPADMLILAGNAIVNEAILTGESTPQWKVSISGRGTEEKLSAKRDKSHMLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLLRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDVCCFDKTGTLTSDDMEFRGVVGLGDKEDLETDMTSVSLRTVEILASCHALVIVDSKLVGDPLEKAALKGVDWTYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDVPSFYVETFKKFTRQGSRVLALAYKSLPDMTVSEARGLDRDMVESDLTFAGFAVFNCPIRADSATVLSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSKKGTEEYEWLSPDELQTVPYREKEVGDLSETYDLCIGGDCIGMLQRTSTVLDVIPYVKVFARVAPEQKELILTTFKTVGRITLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGDSSSEASKDEAVRSAKSKKSKPSSESSGKALVNGEGSSKSKVVAKLDSSAEQASNRPRTPAEIQRQKLKKMMDELNDEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLLFLISSVNEAEKHMPDECIEPDSNFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLAWALLMFLCCYSWERLLRWMFPGKIPAWRQRQRRVAANLEKKQV 1191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31714264 31738801 + Sed0001545.2 Sed08g1659 723435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1659 1191 NCBIfam HAD-IC family P-type ATPase 774 828 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1659 1191 NCBIfam HAD-IC family P-type ATPase 403 517 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g1659 1191 MobiDBLite consensus disorder prediction 833 902 - -
Sed08g1659 1191 MobiDBLite consensus disorder prediction 880 899 - -
Sed08g1659 1191 FunFam Cation-transporting ATPase 669 845 - -
Sed08g1659 1191 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166(InterPro)
Sed08g1659 1191 SFLD Haloacid Dehalogenase 469 955 - -
Sed08g1659 1191 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Sed08g1659 1191 SFLD p-type atpase 469 955 IPR044492 -
Sed08g1659 1191 Gene3D - 483 668 IPR023299 GO:0000166(InterPro)
Sed08g1659 1191 SUPERFAMILY HAD-like 483 834 IPR036412 -
Sed08g1659 1191 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Sed08g1659 1191 FunFam Cation-transporting ATPase 484 668 - -
Sed08g1659 1191 CDD P-type_ATPase_cation 170 1107 IPR047820 -
Sed08g1659 1191 SUPERFAMILY Calcium ATPase, transduction domain A 256 386 IPR008250 -
Sed08g1659 1191 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Sed08g1659 1191 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Sed08g1659 1191 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Sed08g1659 1191 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Sed08g1659 1191 Gene3D - 669 846 IPR023214 -
Sed08g1659 1191 FunFam Cation-transporting ATPase 226 388 - -
Sed08g1659 1191 Gene3D - 224 387 - -
Sed08g1659 1191 Pfam E1-E2 ATPase 256 468 - -
Sed08g1659 1191 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1169 IPR023298 -
Sed08g1659 1191 PANTHER CATION-TRANSPORTING ATPASE-RELATED 9 1174 IPR006544 GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0019829(PANTHER)|GO:0030176(PANTHER)|GO:0055085(PANTHER)|GO:0140358(InterPro)
Sed08g1659 1191 MobiDBLite consensus disorder prediction 844 861 - -
Sed08g1659 1191 NCBIfam ATP13A2 family polyamine export P-type ATPase 41 1149 IPR006544 GO:0016020(InterPro)|GO:0140358(InterPro)
Sed08g1659 1191 Pfam Cation transport ATPase (P-type) 540 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1659 Sed-Chr8:31714264 Sed11g0274 Sed-Chr11:2426183 0.00E+00 dispersed
Sed08g1658 Sed-Chr8:31714264 Sed08g1659 Sed-Chr8:31714264 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1659 K14950 - csv:101215828 2241.85