Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1674 ATGGCATTAGAAGCTGTTGTTTTTCCTCAAGATCCATTAAGTTACAAAGATCTCTACACTTTGTATGGAGGAACAATTTGCACAAACGAAAGCTTTGAATACCCTCAAATCCCCCATCATTTTCCCGAGAAACAAACAGAAAATTTCCCTGTTTTTGTTCCAAACCCGCCACTGAAACCCGAACCAAATCCGACCCGACCCAGAAAACGAAGACCCAAATCGCCCAAGAATAAAGAGCAAATCGAGAATCAAAGAATAACCCACATCGCTGTGGAACGGAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTGATGCCAGATTCTTACATTCAAAGGGGAGATCAAGCTTCGATTATTGGCGGAGCCATTAATTTCTTGAAGGTGCTTGAACAGAAAGTTCAGTTTCTTTCGAGTTCTAATTGTTCTTGTTCTGCAGAAAATGAAACCCAAATCCCATCTTCCATTGCTGATGTTGAAGTAACAATGGTAGAAAATCATGCTAATTTGAAAATAAGATCAAAGAAAAGGCCTAAACAGGTTTTGAAAATGGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCACCTCAATATCTCAGCCATTGACCAAATTGCCCTTTACTCTCTTAGTGTTAAGGTTGAAGATGATTGCAAGCTGAGTTCTGTTGATGAAATTGCTTCTGCTCTGCATCTGTTGCTTGGTAGAATTGAACAAGATTCTCTTATGAACTGA 750 39.33 MALEAVVFPQDPLSYKDLYTLYGGTICTNESFEYPQIPHHFPEKQTENFPVFVPNPPLKPEPNPTRPRKRRPKSPKNKEQIENQRITHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFLKVLEQKVQFLSSSNCSCSAENETQIPSSIADVEVTMVENHANLKIRSKKRPKQVLKMVAGLHSLSLSVLHLNISAIDQIALYSLSVKVEDDCKLSSVDEIASALHLLLGRIEQDSLMN 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31884736 31885898 - Sed0024064.1 Sed08g1674 723450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1674 249 Gene3D - 74 164 IPR036638 GO:0046983(InterPro)
Sed08g1674 249 SMART finulus 89 140 IPR011598 GO:0046983(InterPro)
Sed08g1674 249 Pfam Helix-loop-helix DNA-binding domain 84 134 IPR011598 GO:0046983(InterPro)
Sed08g1674 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 152 IPR036638 GO:0046983(InterPro)
Sed08g1674 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 134 IPR011598 GO:0046983(InterPro)
Sed08g1674 249 PANTHER MAX DIMERIZATION, MAD 146 241 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed08g1674 249 MobiDBLite consensus disorder prediction 48 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1674 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0168 Sed-Chr4:1134490 Sed08g1674 Sed-Chr8:31884736 1.00E-43 dispersed
Sed08g1674 Sed-Chr8:31884736 Sed13g0085 Sed-Chr13:536482 4.60E-14 dispersed
Sed12g0001 Sed-Chr12:25264 Sed08g1674 Sed-Chr8:31884736 3.10E-11 transposed
Sed11g0309 Sed-Chr11:2818125 Sed08g1674 Sed-Chr8:31884736 6.80E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g459 . . . . . . . . Cmo05g00543 . . . . . Sed08g1674 . . Bhi04g00791 Tan02g2427 Cmetu03g0550 . Hepe10g0469 . Lcy13g1533 Cla08g01134 Cam08g1591 Cec08g1161 Cco08g1287 Clacu08g1291 . Cre08g1073 Cone4ag1316 Cone7ag1260 Cone17ag1201 Cone20ag0528 . . . Cme03g01839 . . . . . . . . . . . . Cma05g00515 Car05g00466 . Cpe11g00455 . . . . . . . . . . . . . . . Lsi08g00990 Csa02g02175 Chy03g01342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006999 1 0 0 1 1 1 3 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39365 PF00010 HLH 2.00E-09 No_clan Sed TF