Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1693 | ATGCAAGATATCTTCGCTTCTGTTCGCCGATCACTGGTGTTTCGCGCTCCGGTGGACAATGACGATTCCGATTCCAATTCCAATTCCAATTCTGCTGCAATCGGAGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCAGGAAATCCAGAGTGTTTTCTAGGCAATCCCCGTCGCCATCGGCTCTGCCTCCAATTCCGACCGACCCTCCCATTCGATGGCGCAAGGGCGAGTTGATCGGCTGCGGCGCCTTTGGCCGGGTCTATATGGGCATGAACCTCGGCTCCGGCGAGCTTCTCGCTGTCAAACAGGTTCTGATTGCTGCAAATTGCGCTTCCAAGGAGAAAGCACAGGCTCATGTTAAAGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCATTCTCATCCAAATATTGTTAGGTATTTGGGCACGGTTAGGGAAGATGATTCTTTAAATATACTATTGGAATTTGTCTCTGGTGGATCGATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCGGTTATAAGAACATATACAAAACAGTTATTACTGGGTTTGGAATATTTACACAAGAACGGTATCATGCACAGGGATATTAAGGGGGCAAATATTCTTGTAGATAACAAGGGTTGCATTAAGCTTGCTGATTTTGGTGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTTTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACGGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTTATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAATTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCCACTGCATCTGAACTTCTGAAGCATCCTTTTGTTACGGGACAGCAAGCAGAATCTCAACTTGCTGCACATGATGTATGCACGGAGCCCTTGGAAATCCATTCACCTTTATGTACTTCGAACGTTGAATTGAGCAAAACTCCAACGCATCCTGAACCAAGTGATATGTGTAATTTGGATAGTTTGAGCTGCTCAAAAGCATACACTGCAAACAAACAAGAAAATTGTATGTGGGGAGCAAACAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAACTTAGGTCTTCTATTACACCTGAGAATTTTAAGAGTTATAACCCAATCTGTGAGCCGTCTGATGATGAGGACTGCAAATTTGATCAAAGTCCAGTAGTAAACCAAGGAAGCAATTTGGATGAGCAAGCACTTGCCCCTGGCGGCTGTTCTGGAGTTTTTGATGATGAGCAAAACTTCTCATTTCCTAGTGGACAATCTCTTTCCGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCCTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAAGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATAGAGAGTAATCAAGAATTAAATACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTAATCCATCCCCAGCTTTTGATGCTTTTGGCACTGGGAGCCCTGGGAGTGGTAGCAGGGGTAATGCAAATGATCAGAGGTCACAACACAACGATTGGAAAGGACTTCTAGTTGATGGTCAATCAGAGTCTGGTAGCCCGAGTAAACAATATTCTGAAATTCAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGCGAAAACGAGAGATGATGCGTCAAGCTGGTGGCGGAGGAAAAACTTCATCTCCAAAGGATAAATCCATTGGCAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTACGGGACGATGCGTCGGGTGCTGGGAGGGATACCAGGGAAAACTTCATCTCCTAA | 2058 | 43.83 | MQDIFASVRRSLVFRAPVDNDDSDSNSNSNSAAIGVGALVDKINSSIRKSRVFSRQSPSPSALPPIPTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANCASKEKAQAHVKELEEEVKLLKDHSHPNIVRYLGTVREDDSLNILLEFVSGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFYIGTTKSHPPIPEQLSIEAKDFLLKCLQKEPNLRPTASELLKHPFVTGQQAESQLAAHDVCTEPLEIHSPLCTSNVELSKTPTHPEPSDMCNLDSLSCSKAYTANKQENCMWGANNSDDEMCQIDDKDDFMLDEVKLRSSITPENFKSYNPICEPSDDEDCKFDQSPVVNQGSNLDEQALAPGGCSGVFDDEQNFSFPSGQSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESNQELNTPKYLKLPPKSRSPSRSPGNPSPAFDAFGTGSPGSGSRGNANDQRSQHNDWKGLLVDGQSESGSPSKQYSEIQRKWKEELDQELERKREMMRQAGGGGKTSSPKDKSIGRQRERTRFASPLRDDASGAGRDTRENFIS | 685 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 32027785 | 32033559 | + | Sed0023188.1 | Sed08g1693 | 723469 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1693 | 685 | Gene3D | Transferase(Phosphotransferase) domain 1 | 73 | 360 | - | - | |
Sed08g1693 | 685 | Coils | Coil | 620 | 640 | - | - | |
Sed08g1693 | 685 | Coils | Coil | 114 | 134 | - | - | |
Sed08g1693 | 685 | MobiDBLite | consensus disorder prediction | 580 | 596 | - | - | |
Sed08g1693 | 685 | Pfam | Protein kinase domain | 75 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g1693 | 685 | CDD | STKc_MAPKKK | 73 | 336 | - | - | |
Sed08g1693 | 685 | MobiDBLite | consensus disorder prediction | 546 | 685 | - | - | |
Sed08g1693 | 685 | MobiDBLite | consensus disorder prediction | 652 | 685 | - | - | |
Sed08g1693 | 685 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 40 | 341 | IPR050538 | - | |
Sed08g1693 | 685 | MobiDBLite | consensus disorder prediction | 618 | 640 | - | - | |
Sed08g1693 | 685 | SUPERFAMILY | Protein kinase-like (PK-like) | 73 | 381 | IPR011009 | - | |
Sed08g1693 | 685 | ProSiteProfiles | Protein kinase domain profile. | 74 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g1693 | 685 | SMART | serkin_6 | 74 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g1693 | 685 | FunFam | Mitogen-activated protein kinase kinase kinase 2 | 73 | 366 | - | - | |
Sed08g1693 | 685 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 103 | IPR017441 | GO:0005524(InterPro) | |
Sed08g1693 | 685 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 198 | 210 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1876 | Sed-Chr4:33469910 | Sed08g1693 | Sed-Chr8:32027785 | 1.20E-199 | dispersed | |
Sed04g1877 | Sed-Chr4:33469910 | Sed08g1693 | Sed-Chr8:32027785 | 1.60E-196 | dispersed | |
Sed05g1300 | Sed-Chr5:25162172 | Sed08g1693 | Sed-Chr8:32027785 | 1.40E-59 | dispersed | |
Sed06g1194 | Sed-Chr6:34931060 | Sed08g1693 | Sed-Chr8:32027785 | 3.40E-58 | dispersed | |
Sed08g1693 | Sed-Chr8:32027785 | Sed10g1070 | Sed-Chr10:9861394 | 1.20E-75 | dispersed | |
Sed08g1693 | Sed-Chr8:32027785 | Sed08g1694 | Sed-Chr8:32027785 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79643 | PF00069 | Pkinase | 4.10E-71 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1693 | K20606 | - | csv:101209358 | 1135.17 |