Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1693 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCACTGGTGTTTCGCGCTCCGGTGGACAATGACGATTCCGATTCCAATTCCAATTCCAATTCTGCTGCAATCGGAGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCAGGAAATCCAGAGTGTTTTCTAGGCAATCCCCGTCGCCATCGGCTCTGCCTCCAATTCCGACCGACCCTCCCATTCGATGGCGCAAGGGCGAGTTGATCGGCTGCGGCGCCTTTGGCCGGGTCTATATGGGCATGAACCTCGGCTCCGGCGAGCTTCTCGCTGTCAAACAGGTTCTGATTGCTGCAAATTGCGCTTCCAAGGAGAAAGCACAGGCTCATGTTAAAGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCATTCTCATCCAAATATTGTTAGGTATTTGGGCACGGTTAGGGAAGATGATTCTTTAAATATACTATTGGAATTTGTCTCTGGTGGATCGATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCGGTTATAAGAACATATACAAAACAGTTATTACTGGGTTTGGAATATTTACACAAGAACGGTATCATGCACAGGGATATTAAGGGGGCAAATATTCTTGTAGATAACAAGGGTTGCATTAAGCTTGCTGATTTTGGTGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTTTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACGGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTTATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAATTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCCACTGCATCTGAACTTCTGAAGCATCCTTTTGTTACGGGACAGCAAGCAGAATCTCAACTTGCTGCACATGATGTATGCACGGAGCCCTTGGAAATCCATTCACCTTTATGTACTTCGAACGTTGAATTGAGCAAAACTCCAACGCATCCTGAACCAAGTGATATGTGTAATTTGGATAGTTTGAGCTGCTCAAAAGCATACACTGCAAACAAACAAGAAAATTGTATGTGGGGAGCAAACAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAACTTAGGTCTTCTATTACACCTGAGAATTTTAAGAGTTATAACCCAATCTGTGAGCCGTCTGATGATGAGGACTGCAAATTTGATCAAAGTCCAGTAGTAAACCAAGGAAGCAATTTGGATGAGCAAGCACTTGCCCCTGGCGGCTGTTCTGGAGTTTTTGATGATGAGCAAAACTTCTCATTTCCTAGTGGACAATCTCTTTCCGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCCTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAAGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATAGAGAGTAATCAAGAATTAAATACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTAATCCATCCCCAGCTTTTGATGCTTTTGGCACTGGGAGCCCTGGGAGTGGTAGCAGGGGTAATGCAAATGATCAGAGGTCACAACACAACGATTGGAAAGGACTTCTAGTTGATGGTCAATCAGAGTCTGGTAGCCCGAGTAAACAATATTCTGAAATTCAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGCGAAAACGAGAGATGATGCGTCAAGCTGGTGGCGGAGGAAAAACTTCATCTCCAAAGGATAAATCCATTGGCAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTACGGGACGATGCGTCGGGTGCTGGGAGGGATACCAGGGAAAACTTCATCTCCTAA 2058 43.83 MQDIFASVRRSLVFRAPVDNDDSDSNSNSNSAAIGVGALVDKINSSIRKSRVFSRQSPSPSALPPIPTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANCASKEKAQAHVKELEEEVKLLKDHSHPNIVRYLGTVREDDSLNILLEFVSGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFYIGTTKSHPPIPEQLSIEAKDFLLKCLQKEPNLRPTASELLKHPFVTGQQAESQLAAHDVCTEPLEIHSPLCTSNVELSKTPTHPEPSDMCNLDSLSCSKAYTANKQENCMWGANNSDDEMCQIDDKDDFMLDEVKLRSSITPENFKSYNPICEPSDDEDCKFDQSPVVNQGSNLDEQALAPGGCSGVFDDEQNFSFPSGQSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESNQELNTPKYLKLPPKSRSPSRSPGNPSPAFDAFGTGSPGSGSRGNANDQRSQHNDWKGLLVDGQSESGSPSKQYSEIQRKWKEELDQELERKREMMRQAGGGGKTSSPKDKSIGRQRERTRFASPLRDDASGAGRDTRENFIS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32027785 32033559 + Sed0023188.1 Sed08g1693 723469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1693 685 Gene3D Transferase(Phosphotransferase) domain 1 73 360 - -
Sed08g1693 685 Coils Coil 620 640 - -
Sed08g1693 685 Coils Coil 114 134 - -
Sed08g1693 685 MobiDBLite consensus disorder prediction 580 596 - -
Sed08g1693 685 Pfam Protein kinase domain 75 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1693 685 CDD STKc_MAPKKK 73 336 - -
Sed08g1693 685 MobiDBLite consensus disorder prediction 546 685 - -
Sed08g1693 685 MobiDBLite consensus disorder prediction 652 685 - -
Sed08g1693 685 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 40 341 IPR050538 -
Sed08g1693 685 MobiDBLite consensus disorder prediction 618 640 - -
Sed08g1693 685 SUPERFAMILY Protein kinase-like (PK-like) 73 381 IPR011009 -
Sed08g1693 685 ProSiteProfiles Protein kinase domain profile. 74 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1693 685 SMART serkin_6 74 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1693 685 FunFam Mitogen-activated protein kinase kinase kinase 2 73 366 - -
Sed08g1693 685 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Sed08g1693 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1876 Sed-Chr4:33469910 Sed08g1693 Sed-Chr8:32027785 1.20E-199 dispersed
Sed04g1877 Sed-Chr4:33469910 Sed08g1693 Sed-Chr8:32027785 1.60E-196 dispersed
Sed05g1300 Sed-Chr5:25162172 Sed08g1693 Sed-Chr8:32027785 1.40E-59 dispersed
Sed06g1194 Sed-Chr6:34931060 Sed08g1693 Sed-Chr8:32027785 3.40E-58 dispersed
Sed08g1693 Sed-Chr8:32027785 Sed10g1070 Sed-Chr10:9861394 1.20E-75 dispersed
Sed08g1693 Sed-Chr8:32027785 Sed08g1694 Sed-Chr8:32027785 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79643 PF00069 Pkinase 4.10E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1693 K20606 - csv:101209358 1135.17