Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1694 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCACTGGTGTTTCGCGCTCCGGTGGACAATGACGATTCCGATTCCAATTCCAATTCCAATTCTGCTGCAATCGGAGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCAGGAAATCCAGAGTGTTTTCTAGGCAATCCCCGTCGCCATCGGCTCTGCCTCCAATTCCGACCGACCCTCCCATTCGATGGCGCAAGGGCGAGTTGATCGGCTGCGGCGCCTTTGGCCGGGTCTATATGGGCATGAACCTCGGCTCCGGCGAGCTTCTCGCTGTCAAACAGGTTCTGATTGCTGCAAATTGCGCTTCCAAGGAGAAAGCACAGGCTCATGTTAAAGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCATTCTCATCCAAATATTGTTAGGTATTTGGGCACGGTTAGGGAAGATGATTCTTTAAATATACTATTGGAATTTGTCTCTGGTGGATCGATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCGGTTATAAGAACATATACAAAACAGTTATTACTGGGTTTGGAATATTTACACAAGAACGGTATCATGCACAGGGATATTAAGGGGGCAAATATTCTTGTAGATAACAAGGGTTGCATTAAGCTTGCTGATTTTGGTGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTTTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACGGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTTATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCAATTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCCACTGCATCTGAACTTCTGAAGCATCCTTTTGTTACGGGACAGCAAGCAGAATCTCAACTTGCTGCACATGATGTATGCACGGAGCCCTTGGAAATCCATTCACCTTTATGTACTTCGAACGTTGAATTGAGCAAAACTCCAACGCATCCTGAACCAAGTGATATGTGTAATTTGGATAGTTTGAGCTGCTCAAAAGCATACACTGCAAACAAACAAGAAAATTGTATGTGGGGAGCAAACAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAACTTAGGTCTTCTATTACACCTGAGAATTTTAAGAGTTATAACCCAATCTGTGAGCCGTCTGATGATGAGGACTGCAAATTTGATCAAAGTCCAGTAGTAAACCAAGGAAGCAATTTGGATGAGCAAGCACTTGCCCCTGGCGGCTGTTCTGGAGTTTTTGATGATGAGCAAAACTTCTCATTTCCTAGTGGACAATCTCTTTCCGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCCTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCACTATATGAAGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATAGAGAGTAATCAAGAATTAAATACTCCTAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCCGGTAATCCATCCCCAGCTTTTGATGCTTTTGGCACTGGGAGCCCTGGGAGTGGTAGCAGGGGTAATGCAAATGATCAGAGGTCACAACACAACGATTGGAAAGGACTTCTAGTTGATGGTCAATCAGAGTCTGGTAGCCCGAGTAAACAATATTCTGAAATTCAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGCGAAAACGAGAGATGATGCGTCAAGCTGGTGGCGGAGGAAAAACTTCATCTCCAAAGGATAAATCCATTGGCAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTACGGTTAGATGTCTAA 2019 43.44 MQDIFASVRRSLVFRAPVDNDDSDSNSNSNSAAIGVGALVDKINSSIRKSRVFSRQSPSPSALPPIPTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANCASKEKAQAHVKELEEEVKLLKDHSHPNIVRYLGTVREDDSLNILLEFVSGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFYIGTTKSHPPIPEQLSIEAKDFLLKCLQKEPNLRPTASELLKHPFVTGQQAESQLAAHDVCTEPLEIHSPLCTSNVELSKTPTHPEPSDMCNLDSLSCSKAYTANKQENCMWGANNSDDEMCQIDDKDDFMLDEVKLRSSITPENFKSYNPICEPSDDEDCKFDQSPVVNQGSNLDEQALAPGGCSGVFDDEQNFSFPSGQSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESNQELNTPKYLKLPPKSRSPSRSPGNPSPAFDAFGTGSPGSGSRGNANDQRSQHNDWKGLLVDGQSESGSPSKQYSEIQRKWKEELDQELERKREMMRQAGGGGKTSSPKDKSIGRQRERTRFASPLRLDV 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32027785 32033559 + Sed0023188.2 Sed08g1694 723470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1694 672 Gene3D Transferase(Phosphotransferase) domain 1 73 360 - -
Sed08g1694 672 Coils Coil 620 640 - -
Sed08g1694 672 MobiDBLite consensus disorder prediction 652 672 - -
Sed08g1694 672 Coils Coil 114 134 - -
Sed08g1694 672 MobiDBLite consensus disorder prediction 580 596 - -
Sed08g1694 672 Pfam Protein kinase domain 75 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1694 672 CDD STKc_MAPKKK 73 336 - -
Sed08g1694 672 SUPERFAMILY Protein kinase-like (PK-like) 73 381 IPR011009 -
Sed08g1694 672 MobiDBLite consensus disorder prediction 546 672 - -
Sed08g1694 672 MobiDBLite consensus disorder prediction 618 640 - -
Sed08g1694 672 ProSiteProfiles Protein kinase domain profile. 74 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1694 672 SMART serkin_6 74 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1694 672 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Sed08g1694 672 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 40 341 IPR050538 -
Sed08g1694 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1694 672 FunFam Mitogen-activated protein kinase kinase kinase 2 73 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1694 Sed-Chr8:32027785 Sed10g1070 Sed-Chr10:9861394 1.10E-75 dispersed
Sed08g1693 Sed-Chr8:32027785 Sed08g1694 Sed-Chr8:32027785 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79644 PF00069 Pkinase 3.90E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1694 K20606 - csv:101209358 1109.36