Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1715 ATGTATACAAGACCGATGGTTTTTTCGCCGATGGCAAGAACGTCGGCATATCCGGTTGTGATAGATTTCAAAGCTGGTTGGTGCGGACCGTGTAGGCTTATGAAGCCTGTATTTGCAGAGTTTGCTTCCAAGTACACAAATGCTGTATTCCTTGAGATCGATGTGGATAAGTTGCAGGTTTTGGCTGAAAGATTTGGGGTGAATGAGATGCCGACATTTCTACTAATTAAACAAGGGCACGTGGTTGATAAAGTGATTGGTGCAGATAAGATTGATCTCGAGAGAGCAATCCTAAAGCACTTAAATACTTGTAATGCATAA 321 42.06 MYTRPMVFSPMARTSAYPVVIDFKAGWCGPCRLMKPVFAEFASKYTNAVFLEIDVDKLQVLAERFGVNEMPTFLLIKQGHVVDKVIGADKIDLERAILKHLNTCNA 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32146991 32150768 - Sed0024862.3 Sed08g1715 723491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1715 106 ProSiteProfiles Thioredoxin domain profile. 1 102 IPR013766 -
Sed08g1715 106 PIRSF Thioredoxin 4 102 IPR005746 GO:0015035(InterPro)
Sed08g1715 106 Pfam Thioredoxin 14 95 IPR013766 -
Sed08g1715 106 PRINTS Thioredoxin family signature 19 27 - -
Sed08g1715 106 PRINTS Thioredoxin family signature 27 36 - -
Sed08g1715 106 PRINTS Thioredoxin family signature 66 77 - -
Sed08g1715 106 PANTHER THIOREDOXIN-LIKE PROTEIN 1 17 103 - GO:0005829(PANTHER)|GO:0015035(PANTHER)
Sed08g1715 106 CDD TRX_family 18 97 - -
Sed08g1715 106 Gene3D Glutaredoxin 10 105 - -
Sed08g1715 106 SUPERFAMILY Thioredoxin-like 18 103 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1715 K03671 - - osa:4342593 109.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1713 Sed-Chr8:32146991 Sed08g1715 Sed-Chr8:32146991 1.20E-46 dispersed
Sed08g1715 Sed-Chr8:32146991 Sed14g1166 Sed-Chr14:21015007 1.90E-22 dispersed
Sed08g1714 Sed-Chr8:32146991 Sed08g1715 Sed-Chr8:32146991 8.20E-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g838 . . . . . . . . Cmo04g01700 Cmo18g01209 . Cma18g01188 . Car18g01095 Sed08g1715 Cpe09g00142 Cpe01g01434 Bhi07g01632 Tan04g1133 Cmetu02g1744 Lac13g0267 Hepe10g1704 . . Cla05g02485 Cam05g2669 Cec05g2703 Cco05g2738 Clacu05g2671 Cmu05g2525 Cre05g2640 . Cone19ag0977 Cone8ag0624 . Lsi04g00482 Csa05g02401 Chy10g00963 Cme10g00463 . . . . . . . . . . . Cma04g01622 . Car04g01663 . . . . . . . . . . . . . . . . . . . . .