Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1728 ATGCTTCGTCTTCAATGGCTTTCTTCTTCGTTGCTTCCGCCATTAAACCCCGAGCTCTGCTCCAAACCCTGCTCCAACCGCAGGCTATGTACAATCAACTCCTCTCGCCAACTCTTCACCCTCACCGCTACGCCAAAACCTTCTCCGAAATGCCAGTACTCCTGGAACACGCAGCAGCAGCATCAGCCGCCCTTCGAACCAGGCTCTCAGCCCGGTTCATTTTCGCCACAAACTCGCGCCGGAGCTGCTGCGGCATTGCCACCGAGGTTTTTTGTCGGTCATTCAATATACAAAGGAAAAGCTGCTCTTACCGTTGAGCCTAGGCCACCAGAGTTTACACCTTTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTAATGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTGGCCCTTGGCCCACGGGAGTCTTGTGAATTTTTTCACGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTAAGCGTTCAGAACAAGCTAATCAACATGGACGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTCGTTGAGGCTTTTAAGTTTGTCTTGCCGCACCTCATGGGTTGGCATACGATTACGAGCACCATGATGAGGCCTGAAGAAAGCAGCAGCCGAGGGAATAACGCCAATCCCAGATCTGGGGGTGATTTCGAATGGAGCAGATAG 825 49.21 MLRLQWLSSSLLPPLNPELCSKPCSNRRLCTINSSRQLFTLTATPKPSPKCQYSWNTQQQHQPPFEPGSQPGSFSPQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFVLPHLMGWHTITSTMMRPEESSSRGNNANPRSGGDFEWSR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32240759 32246022 + Sed0010977.1 Sed08g1728 723504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1728 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 34 274 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Sed08g1728 274 MobiDBLite consensus disorder prediction 50 79 - -
Sed08g1728 274 MobiDBLite consensus disorder prediction 50 77 - -
Sed08g1728 274 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 257 - -
Sed08g1728 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 274 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g1728 274 MobiDBLite consensus disorder prediction 250 274 - -
Sed08g1728 274 MobiDBLite consensus disorder prediction 250 268 - -
Sed08g1728 274 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g1728 274 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1728 K26559 - - csv:101203474 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1728 Sed-Chr8:32240759 Sed10g1648 Sed-Chr10:33128356 1.30E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1756 . . . Bda03g00364 . Bpe04g00326 . . . . Cma01g00881 . Car01g00805 . . . . . . . . . . . Cla08g00178 . Cec08g0075 . . Cmu08g0168 Cre08g0158 . . . . . . . Cme09g00121 . . . . . . . . Sed08g1728 Cmo01g00923 . . . . . . Cpe02g00983 Bhi06g00113 Tan10g1838 Cmetu09g1050 . . . . . . . . . . . Lsi08g00178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1728 . 46 274 Whirly Transcription Factor Family AT1G14410 66.8 4.7e-86 315.5
Sed10g1648 . 56 242 Whirly Transcription Factor Family AT1G71260 60.1 6.9e-60 228.4
Sed08g1728 . 74 274 Whirly Transcription Factor Family AT2G02740 72.3 5.9e-84 308.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39366 PF08536 Whirly 8.20E-61 CL0609 Sed TF