Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1728 ATGCTTCGTCTTCAATGGCTTTCTTCTTCGTTGCTTCCGCCATTAAACCCCGAGCTCTGCTCCAAACCCTGCTCCAACCGCAGGCTATGTACAATCAACTCCTCTCGCCAACTCTTCACCCTCACCGCTACGCCAAAACCTTCTCCGAAATGCCAGTACTCCTGGAACACGCAGCAGCAGCATCAGCCGCCCTTCGAACCAGGCTCTCAGCCCGGTTCATTTTCGCCACAAACTCGCGCCGGAGCTGCTGCGGCATTGCCACCGAGGTTTTTTGTCGGTCATTCAATATACAAAGGAAAAGCTGCTCTTACCGTTGAGCCTAGGCCACCAGAGTTTACACCTTTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTAATGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTGGCCCTTGGCCCACGGGAGTCTTGTGAATTTTTTCACGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTAAGCGTTCAGAACAAGCTAATCAACATGGACGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTCGTTGAGGCTTTTAAGTTTGTCTTGCCGCACCTCATGGGTTGGCATACGATTACGAGCACCATGATGAGGCCTGAAGAAAGCAGCAGCCGAGGGAATAACGCCAATCCCAGATCTGGGGGTGATTTCGAATGGAGCAGATAG 825 49.21 MLRLQWLSSSLLPPLNPELCSKPCSNRRLCTINSSRQLFTLTATPKPSPKCQYSWNTQQQHQPPFEPGSQPGSFSPQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFVLPHLMGWHTITSTMMRPEESSSRGNNANPRSGGDFEWSR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32240759 32246022 + Sed0010977.1 Sed08g1728 723504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1728 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 34 274 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Sed08g1728 274 MobiDBLite consensus disorder prediction 50 79 - -
Sed08g1728 274 MobiDBLite consensus disorder prediction 50 77 - -
Sed08g1728 274 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 257 - -
Sed08g1728 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 274 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g1728 274 MobiDBLite consensus disorder prediction 250 274 - -
Sed08g1728 274 MobiDBLite consensus disorder prediction 250 268 - -
Sed08g1728 274 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g1728 274 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1728 Sed-Chr8:32240759 Sed10g1648 Sed-Chr10:33128356 1.30E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39366 PF08536 Whirly 8.20E-61 CL0609 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1728 K26559 - csv:101203474 457.988