Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1729 ATGCTTCGGCCATGGCCATTCCTTCAATTCTGTTTCATTTGTATCAACATCATCATTCCTCTTTGTTGCTCTCAGTCCATTTCCCCTCAGAATATTGAAACTTCCTTCCCTTTTTCATTGCCATTTCATGCCCCAATCATCAATAATGCTTCAGGCGATCTGTCGACTATCTCTCGGCCGCCTTCACCGCTACAAGAAGCTGTGCAGCTGCGGTCCAAGCCAACGTCCAAGAAAGCCGCCATTCTAGCGGTGGCGGTTTCGACTTCAGTGGCCGGCCTCCTGGTTTCTCTTTGTGTCCTCTTTCTCCTCTGGAGATGCATTCTTGAAAAACATGAGGAAGAGCAAGATAGCACAAGTTCACAATCACGAGAAAGTCGGGCTTTGGTTAGCCATAATGAATTTACAAGATTCAATGGGAACTTCAATGGGTTTATTCTTGAAGAAAATGGTTTGGATGTGATCTATTGGAAGAACCCTGCAAGGGGAGAGTGGAAGAGAAATGAAGATGAAGAAAAGGGTTATGTGAAAGAGGGAGAAAGGAAGCCTGAGAGAGTGCAAGAAACTCCTTTGCTCCATGGAAGATCTTCAACAACAAAAATGGAAGCTCTTGCTCTTGATCACTCTCTCCCTAGCTCACAAGCATTGCCATGGATGCCTCTCCCTCCGCCACCACCAGCGCCTCCCCGAAGAAAACCTCCACTACCAGAGGCGGTTGGTAATTCAGAACCATCTTTATCAGAGAATGATCAAACTAGACTGAAGCCATTACATTGGGATAAGGTTAATACCAATGTAGATCATGCAATGGTGTGGGACAAGATTGATGGTGGTTCTTTCAGGTTTAATGGTGACCTCATGGAAGCTCTATTCGGGTATGTAGCCACAAACAAGAAATCCCCAACAAAGCCATGTGCCAAGTATAAGGAAACAGAATCAACAGGCTCCAACAATGGCGGACGAGAACGAATCGCCATCCTCGACTCTAGAAGGTCAAGAAACATTGCAATAATCCTCAAATCCCTAAACGTTTCTCGGCAAGAACTACTCGAAGCTCTATTAGAGGGACAGGGACTCGATTCAGACACACTGGAGAAGCTAGTCAAGATCACTCCAAATCAAGAAGAGCAATCCCGAATCCTCGAATTCGACGGCGACCCATTAAAGCTTGGAGACGCCGAATCGTTCATCTTCCACCTTCTCAAGGCTGTTCCAACCGTCTTCCGTCGTCTAAACGCCATGCTTTTCAGATCAAACTTCAAGTCAGAGCTTAATCGCATCAAGGACTTTTCACAAACACTTAGTGAGGGTTGCGAAGAGCTAAAGAGAAAAGGCCTACTTACAAAACTATTAGAAGCAACCCTAAAAGCTGGAAACCCATTGAATTCAGGAACAACAAGAGGAAATGCACAAGCATTCAATCTCAGTTCACTCTTAAAACTCTCAGATGTGAAAAGCACAGACGGAAAAACAACATTACTTCACTTCGTCGTCGAACAAGTCATCAGATCCGAAGGGGAAAAACATTTCTCAAACATAAATTCAAACAATCTCATATCAGAACAGGAAAAAGAAATCGAATACGCAAAATTAGGACTATTAGCAATAGAATCACTAACCTCAGAGCTCTGCAACGTTCAAAAAGCATCCACGATCGACTACGAAGCTTTCGCCGCCACTTGCCCTAATCTCTCAATCTACATTTCAGAGATCCAAAAGCTTCTGTCAAATGAAGGGGGTGAATACCAGAGGAAGATGATGGAATTCGCCGAAACCGCCGAGAAAGAGCTGGAAATGGCAAGTAGAGAGCAGATTAGGGCACTGGAGCTTGTGAAGAAGACGAATGAATACTTTGAAACAGGGGAGAGAGAAAATCCGCTAGGGTTGTTTGTGATAGTGAGAGATTTTGTGGCCATGGTTGATCAGGTGTACAGAGAAATAGAAGAGGATTTGAGGAGGAAGGGTAAGATGGGAATTTTGGATCCTTGGACGCCATTGAAGAGCTCTGTGAGTATGATGAGCTTGAGGTTTCCATGTTTGGCGGATCATTTCATGTGTTCAAGTTTTTCAAGCGATTCTGAAGATGATAGCTTCTGA 2094 44.27 MLRPWPFLQFCFICINIIIPLCCSQSISPQNIETSFPFSLPFHAPIINNASGDLSTISRPPSPLQEAVQLRSKPTSKKAAILAVAVSTSVAGLLVSLCVLFLLWRCILEKHEEEQDSTSSQSRESRALVSHNEFTRFNGNFNGFILEENGLDVIYWKNPARGEWKRNEDEEKGYVKEGERKPERVQETPLLHGRSSTTKMEALALDHSLPSSQALPWMPLPPPPPAPPRRKPPLPEAVGNSEPSLSENDQTRLKPLHWDKVNTNVDHAMVWDKIDGGSFRFNGDLMEALFGYVATNKKSPTKPCAKYKETESTGSNNGGRERIAILDSRRSRNIAIILKSLNVSRQELLEALLEGQGLDSDTLEKLVKITPNQEEQSRILEFDGDPLKLGDAESFIFHLLKAVPTVFRRLNAMLFRSNFKSELNRIKDFSQTLSEGCEELKRKGLLTKLLEATLKAGNPLNSGTTRGNAQAFNLSSLLKLSDVKSTDGKTTLLHFVVEQVIRSEGEKHFSNINSNNLISEQEKEIEYAKLGLLAIESLTSELCNVQKASTIDYEAFAATCPNLSIYISEIQKLLSNEGGEYQRKMMEFAETAEKELEMASREQIRALELVKKTNEYFETGERENPLGLFVIVRDFVAMVDQVYREIEEDLRRKGKMGILDPWTPLKSSVSMMSLRFPCLADHFMCSSFSSDSEDDSF 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32246919 32249113 - Sed0009433.1 Sed08g1729 723505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1729 697 ProSiteProfiles Formin homology-2 (FH2) domain profile. 243 665 IPR015425 -
Sed08g1729 697 Gene3D Formin, FH2 domain 241 650 IPR042201 -
Sed08g1729 697 SMART it6_source 243 654 IPR015425 -
Sed08g1729 697 PANTHER FORMIN-RELATED 59 652 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed08g1729 697 MobiDBLite consensus disorder prediction 300 319 - -
Sed08g1729 697 SUPERFAMILY Formin homology 2 domain (FH2 domain) 220 651 - -
Sed08g1729 697 MobiDBLite consensus disorder prediction 210 255 - -
Sed08g1729 697 MobiDBLite consensus disorder prediction 166 188 - -
Sed08g1729 697 MobiDBLite consensus disorder prediction 215 234 - -
Sed08g1729 697 MobiDBLite consensus disorder prediction 166 195 - -
Sed08g1729 697 Pfam Formin Homology 2 Domain 248 639 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1729 K28090 - - csv:101217450 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1596 Sed-Chr6:40779593 Sed08g1729 Sed-Chr8:32246919 1.50E-116 dispersed
Sed08g1729 Sed-Chr8:32246919 Sed07g2651 Sed-Chr7:41953739 3.10E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012958 0 1 0 0 0 1 0 1 1 1 1 1 3 1 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 0 28