Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1747 ATGAAGAGAGGAAAGGATGATGAAAAGACGATGGAGCCTATGTTCCCTAGGCTGAATGTTAATGACACTGAGAAAGGATGGCCGAGAGCGCCTCCAAGGAATAAGATGGCTCTCTATGAACAGTTCACGGTTCCGTCAAAACGTTCCGGTCCTGGGGTTTTGCCTCTCCAGACCAACATCTCTAGAACCCCTGTTACTGCATCATCATCAAGTCAGGGTACAGAAACAGATGGAAATCTGTGCCTGCCATTAAACTTGTCTTCACCAACTCCTAGTAATCAGGTTGGAAATTCTCAAGCTCTCCCATCTAGTGAAGTAAATGTGAACCCTCCAGTGGTACAGCTTGAGCGGAGTCAGCGGAGTCAGCAGATAACAGAAGTAGAAGACGAGGACGATTTTATGGTTCCGGTATACAACCAATCAAAGATGGGTAAAAATCTTGTACAAATTAATGACCATAGGGAAAATTTGTCTTCTCCTGGACCCAAACATTCTGATTGTTCTACAGTTTTGCAAGCTGGTTATGAAAAAGGTCAAGGTCATCTTACATCCTCTAGTGCCCACTCAAGACGCGAAGTAACAACCAGGAAGATGGTGTGTGATAAAAGTAGGGTTACTTCTGAAAAGTCTGCGACAAATTTATTGGATAGAGAGAATATTGATGCACTTCAGAAGGAAACTGATTTATCTAAAGATGAAGAATTTCAAGATAAATCCAACGTTAGTTTTGACAAATTGCGAGGTAGTAATATTCAGCTACAGAGACATTCTAGATCCAGTATTCAACTGGATGATTGTGGGCTTGTTGATGATGTTGTTGAGCGTACACGATTTGGGGAGGTAGATAGTATTCCCTGCTCAAGAGTGGATTCCCATTCTTTCGAAAAGAATGAAAACTTGAACATGCCTGTTGACAATGTTGAAAATCGTATAGATAGGACTTATAGTTCCATGCTGGTTGGGAATGCTGACAGAAGTGACATTCTCTCTGAGAATTCAATGATTGACTCAATTTCTGGCTTGGATGTCTGTCCAGATGATGTTGTAGGAATAATAGGTCCAAAACATTTCTGGAAAGCGAGAAGAGAAATCATTAATCAACAAAGAGTGTTCGAGGTCCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGGTTAATCGCTGAGTCGCCTCATCTTTTACTTGAAGGTGGTATTTTTCTGGACAATTCTTCTCCAAACCCTCTTCCTACAAAAAAACTTAGGATGGACTACACAGTTAAATCGCACGTGCAGCTTAAGCACAGTGATGATCCTAAGAAGCCAAAGCATAATGTGGAATGTTCAGCAGAAAATGCTGTTGGGAAGACTTATCTTCCTCCTGCCTCAATTGGTTGCCAGCCTTCAACTAATGGGCCTTACCCTGTAAATCCACAACCAATTCCTGTTTCTGCTGATAATAATTTAAGCACCTGGTATCAGACACCTGCACATCACTGGTTGGTTCCTGTAATGTCGCCTTCTGAAGGACTCGTATATAAGCCGTACCCGGATCCTGCAATTATGTATGGTGGATGCGGACCTTATGGTCCAATGCCTCCAATAATGAATCCATTCTTTGGATTTCCAGCTCCTGTCCATCAAGGAATTGGAGCTCTTCCTAGTACTCCCATGGTTGGTGGTACCTACTTCCATCCTTATGGCATGCCGGTCATGAATCCAGTTATGTCGGGTTTGTCTGTTGATCAAGTTAACCGGTACATGGGAGATCCGAATCAGTTATCGGGAGGTGTGGCCGCTTCCAATGTGCAGCATCAAACTTCATATGATGTTTCAACACAGAGAGATAGAGATGAAAACCAAGAAACTGCTTCACTAACTGCAAAGTCTCAATCACCCAAAAGGAATGAGGTACAGGTAAGTACAGCAACTAGTCCTGTAACTAGTCCTGCTGGCAAAGTGCAAGGAAATGGAGTCAATCGAACTGCCGAAAGCCGCGATGCGATTTCACTTTTCCCATTAGGTACACCGCTTGCTGAGGAAGGTCCCCAACCTTCCGACTCTGACCAAATGAAACGAGTGATTCGAGTTGTGCCACATAATCGAAGATCTGCGAACGAATCAGCTGCGCGGATTTTCCAATCTATTCAAAATGAGAGAAAACAGTATGACTCAATTTAG 2163 42.95 MKRGKDDEKTMEPMFPRLNVNDTEKGWPRAPPRNKMALYEQFTVPSKRSGPGVLPLQTNISRTPVTASSSSQGTETDGNLCLPLNLSSPTPSNQVGNSQALPSSEVNVNPPVVQLERSQRSQQITEVEDEDDFMVPVYNQSKMGKNLVQINDHRENLSSPGPKHSDCSTVLQAGYEKGQGHLTSSSAHSRREVTTRKMVCDKSRVTSEKSATNLLDRENIDALQKETDLSKDEEFQDKSNVSFDKLRGSNIQLQRHSRSSIQLDDCGLVDDVVERTRFGEVDSIPCSRVDSHSFEKNENLNMPVDNVENRIDRTYSSMLVGNADRSDILSENSMIDSISGLDVCPDDVVGIIGPKHFWKARREIINQQRVFEVQVFELHRLIKVQRLIAESPHLLLEGGIFLDNSSPNPLPTKKLRMDYTVKSHVQLKHSDDPKKPKHNVECSAENAVGKTYLPPASIGCQPSTNGPYPVNPQPIPVSADNNLSTWYQTPAHHWLVPVMSPSEGLVYKPYPDPAIMYGGCGPYGPMPPIMNPFFGFPAPVHQGIGALPSTPMVGGTYFHPYGMPVMNPVMSGLSVDQVNRYMGDPNQLSGGVAASNVQHQTSYDVSTQRDRDENQETASLTAKSQSPKRNEVQVSTATSPVTSPAGKVQGNGVNRTAESRDAISLFPLGTPLAEEGPQPSDSDQMKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32392117 32396791 + Sed0020859.1 Sed08g1747 723523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1747 720 MobiDBLite consensus disorder prediction 581 604 - -
Sed08g1747 720 MobiDBLite consensus disorder prediction 618 655 - -
Sed08g1747 720 MobiDBLite consensus disorder prediction 1 32 - -
Sed08g1747 720 MobiDBLite consensus disorder prediction 581 655 - -
Sed08g1747 720 PANTHER PROTEIN EARLY FLOWERING 3 1 718 IPR039319 GO:2000028(InterPro)
Sed08g1747 720 MobiDBLite consensus disorder prediction 52 105 - -
Sed08g1747 720 MobiDBLite consensus disorder prediction 45 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1747 K12125 - - csv:101203735 1121.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1364 Sed-Chr7:10348934 Sed08g1747 Sed-Chr8:32392117 1.20E-65 dispersed
Sed08g1747 Sed-Chr8:32392117 Sed09g1705 Sed-Chr9:40304543 1.00E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g48 . . Bda01g00608 Bda03g00152 Bpe02g01532 Bpe02g00476 . . Cmo05g00115 Cmo12g00565 . Cma05g00109 . Car12g00573 Sed08g1747 Cpe07g00546 . Bhi04g00485 Tan02g1661 Cmetu03g0883 . Hepe08g1374 . Lcy13g2170 . . . . . . . . . Cone17ag0912 Cone20ag0255 . . . . Blo17g00297 Blo18g00293 Bda01g01321 Bda13g01613 Bpe14g00253 . Bma01g00931 . . . . . . . Car05g00094 Cpe11g00089 . . . . . . . . . . . . . . . Lsi08g01566 Csa02g01855 Chy03g01629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005519 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 1 1 1 40