Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1753 ATGGGGAAGAGATTTTCGTACAATGGTTTTGGATTCAATGGAATTTTCAAAATGTTGGTTGTGACATTGACAATCATAGCTTGTGGAGTTGTGGAGGGTGGTTCAGTTTCTACACAGAAGAAGAGATTGGAAGTTTTTAAGAAATTAAACTCTCTTAGAAAGCAAGCAATAAAAAGCATTCAGAGTGAAGATGACGACATCATAGACTGCGTTAGCGTTTACGACCAGCCTGCTTTCGATCATCCTGCTCTGAGAAATCACACCATCCAGATGGAACCTACTTATGATCCAACCATGGAAAAGCATACAAAGAAACCTGAAGGAGAAAGGGAAGGAATAGAGGAGAAGGATTCAATGGTTGTGAAACAAAGATGGAGGAAAAGTGGAAGTTGTCCTAAAGGAACAATACCGATTCGAAGGGTCCGAAAAGACGTCCTACTCAAAGCCGATTCCATAGAATGCTATGGAAGAAAGAAACCGATGTATTTGGAAGAAATCGCACAGATTTCTAACAACCAAAGTTTAAATCCTCTGCTAGTGAATCATTCGAAGACAGTTCTCCATACTGAAGGACACAACTACAATGCAGCCAAAGGAGACATTAAAGTATGTAACCCGAAGGTTGAATCCGACGACGAATATAGTACTTCCCAAGTGGCTCTCTTAACTGGCCCTTACTACAATTTTGAGGCTATCGAATCTGGATGGGCTGTAAATCCAGGCGTTTACGGGGATCGACAGACTCGACTGTTCGTGTATTGGACCACTGATGCTTCCCACAAAACAGGCTGCTTTGATTTGACTTGCCCTGGTTTTGTTCAAACCAACCATGAAATTGCTCTTGGTTCTGCTATTTATCCAATCTCAACTTCAAATGGACTTACTTATGAAATAACAATGTTCCTTTTCAAGGATTTAGAGACGAGTAATTGGTGGGTGCAATATAATGAAAACATCAACATTGGATATTGGCCAAGTGAATTATTCAGTGCACTAACTTACACAGCAGAAACAGTACAATGGGGAGGGGAAGTTTACAGCACAAAAATAAGAAGAACTCCTCATACTAAAACAGGCATGGGCAATGGAAGGTTTCCCGACTTTGTTTTCGGTAACTCGGGTTGGGTAAAACGGATACGAGCTCGAGATAACTCGATGATCTTGAAGTTTCCAGGTTGGGTTGAGCATTACTCTGATGAATATGATTGTTACGATATCGATTTCGTTCGAGATTACTTAGAAGATCCTGAACTATACTATGGAGGTCCTGGTAGAAATCCCAGGTGTCCCTAG 1293 40.99 MGKRFSYNGFGFNGIFKMLVVTLTIIACGVVEGGSVSTQKKRLEVFKKLNSLRKQAIKSIQSEDDDIIDCVSVYDQPAFDHPALRNHTIQMEPTYDPTMEKHTKKPEGEREGIEEKDSMVVKQRWRKSGSCPKGTIPIRRVRKDVLLKADSIECYGRKKPMYLEEIAQISNNQSLNPLLVNHSKTVLHTEGHNYNAAKGDIKVCNPKVESDDEYSTSQVALLTGPYYNFEAIESGWAVNPGVYGDRQTRLFVYWTTDASHKTGCFDLTCPGFVQTNHEIALGSAIYPISTSNGLTYEITMFLFKDLETSNWWVQYNENINIGYWPSELFSALTYTAETVQWGGEVYSTKIRRTPHTKTGMGNGRFPDFVFGNSGWVKRIRARDNSMILKFPGWVEHYSDEYDCYDIDFVRDYLEDPELYYGGPGRNPRCP 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32403769 32405807 - Sed0001044.1 Sed08g1753 723529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1753 430 Gene3D - 199 323 - -
Sed08g1753 430 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 32 424 IPR053168 -
Sed08g1753 430 MobiDBLite consensus disorder prediction 97 118 - -
Sed08g1753 430 Pfam Neprosin activation peptide 59 194 IPR025521 -
Sed08g1753 430 Pfam Neprosin 212 423 IPR004314 -
Sed08g1753 430 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1753 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1751 Sed-Chr8:32397992 Sed08g1753 Sed-Chr8:32403769 8.20E-235 dispersed
Sed08g1753 Sed-Chr8:32403769 Sed09g1422 Sed-Chr9:38101398 2.00E-86 dispersed
Sed08g1752 Sed-Chr8:32397992 Sed08g1753 Sed-Chr8:32403769 1.40E-184 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g49 Blo01g01477 . . . . Bpe02g00477 . . Cmo05g00114 . . Cma05g00108 . . Sed08g1753 . . Bhi04g00486 Tan02g1660 Cmetu03g1286 . Hepe08g1375 . Lcy13g2171 Cla05g01813 Cam05g1937 Cec05g1950 Cco05g2011 Clacu05g1929 Cmu05g1811 Cre05g1937 Cone4ag1646 . Cone17ag0913 . Lsi04g01441 . . . . . . . . . . . . Cmo01g01758 . . . Car01g01365 Car05g00093 Cpe11g00088 Cpe02g00291 Bhi09g03178 . . . Hepe01g1862 Mch11g0397 . . . . . . . . Lsi08g01567 Csa02g01854 Chy03g01630 Cme07g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011410 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 31