Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1757 ATGGCTCCAAACCCCACCGGAGCTTTACTCTTTCTCTTTTCTCTCGCCGTGATCGGCTTGGCTTCCGGTGGCCGGGATCTCCCCGGAGATCTTCTCCGGCTGCCTTCCGAGGCCTTGAGGTTTTTTCGCGGCGGAGCCGCCGATGCTGGCGACGAGGATTCCGTCGGGACGAGATGGGCCGTTTTGATCGCCGGTTCGAACGGATACTGGAATTACCGGCACCAGGCTGATATCTGCCATGCTTATCAACTGTTGCTGAAAAATGGCCTAAAAGAGGAGAACATCGTCGTTTTCATGTACGATGACATTGCCTCCGATTATGATAACCCGAGGCCTGGGGTCATCATCAACCATCCACAGGGTTCTGATGTTTACCATGGAGTCCCGAAGGATTACACTGGTGAGGATGTTAATGTGAACAACTTTTTCGCTGCCATTCTTGGAAACAAAACAGCTCTAACTGGGGGTAGTGGGAAGGTTGTTGATAGTGGTCCTAATGATCATATTTTCATATACTACAGTGATCATGGCGGGCCCGGTGTGCTTGGGATGCCTACTTACCCCTATATTTATGCCGATGATCTGAATGAAGTTTTAAAGAAGAAGCATGCTTTGGGATCCTACAAAAGTCTGGTATTCTATCTCGAAGCTTGTGAATCAGGAAGTATCTTTGAAGGCCTTCTTCCCGAAGGTTTGAACATTTATACAACCACTGCATCAAATGCTTATGAGAGCAGTTGGGGTACCTACTGTCCAGGGGATATTCCTAGTCCTCCACCAGAGTATGATACCTGCTTAGGTGACTTGTACAGTGTTGCTTGGTTGGAAGACAGTGATGATCACAATTTGAAGACGGAGACTTTACGCCAGCAATATGAACTGGTGAAGAAAAGGACGCTAAATGACGATAATTCTTATGGATCTCATGTCATGCAATATGGTGATATAACGCTCAACAAAAACGCTTTGTTCTCATATCTGGGTACAGATCCTAATAATGAGAACAACACTTTTGTTGAGAAGAACTCTTTGAGGCCAACCAGAAGAGTAGTTACCACCAATCAGCGTGACGCTGATTTGGTCCACTTTTGGGAAAAGTTTCGTAAAGCTCCAGAAGGCTCCACCAAGAAAATCGAAGCCCAGAAGAAGTTTGTTGAAGCAATGTCCCACAGAGTTCATATCGACAACAGTGTGAAGTTAATTGGAAAGCTGTTATTTGGAATTGAAAATGGTCCCGAGGTGCTCGATGCCATCCGTCCCACCGGACGACCCCTAGTCGACGATTGGGACTGTCTTAAAAACATGGTTAGGAGCTTTGAGGCACGCTGTGGATCCCTCTCTCAATATGGAATGAAACACATGAGGTCCTTCGCAAACATCTGCAATGCTGGAATCAGCAAGGACCAGATGGCCGAGGCTTCAGCGCAAGCTTGCTTAAGCGTACCCTCGGGCCCGTGGAGCTCTCTGCACAAGGGCTTCACTGCCTGA 1488 47.58 MAPNPTGALLFLFSLAVIGLASGGRDLPGDLLRLPSEALRFFRGGAADAGDEDSVGTRWAVLIAGSNGYWNYRHQADICHAYQLLLKNGLKEENIVVFMYDDIASDYDNPRPGVIINHPQGSDVYHGVPKDYTGEDVNVNNFFAAILGNKTALTGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTYPYIYADDLNEVLKKKHALGSYKSLVFYLEACESGSIFEGLLPEGLNIYTTTASNAYESSWGTYCPGDIPSPPPEYDTCLGDLYSVAWLEDSDDHNLKTETLRQQYELVKKRTLNDDNSYGSHVMQYGDITLNKNALFSYLGTDPNNENNTFVEKNSLRPTRRVVTTNQRDADLVHFWEKFRKAPEGSTKKIEAQKKFVEAMSHRVHIDNSVKLIGKLLFGIENGPEVLDAIRPTGRPLVDDWDCLKNMVRSFEARCGSLSQYGMKHMRSFANICNAGISKDQMAEASAQACLSVPSGPWSSLHKGFTA 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32429836 32435514 - Sed0000684.1 Sed08g1757 723533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1757 495 Gene3D - 56 352 - -
Sed08g1757 495 PANTHER HEMOGLOBINASE FAMILY MEMBER 47 478 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
Sed08g1757 495 Pfam Legumain, prodomain 383 478 IPR048501 -
Sed08g1757 495 FunFam Vacuolar-processing enzyme beta-isozyme 56 352 - -
Sed08g1757 495 Pfam Peptidase C13 family 58 328 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed08g1757 495 FunFam Vacuolar-processing enzyme beta-isozyme 355 483 - -
Sed08g1757 495 CDD legumain_C 357 478 IPR048501 -
Sed08g1757 495 PIRSF AE 5 495 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Sed08g1757 495 PIRSF Legumain 6 495 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed08g1757 495 Gene3D - 355 482 IPR046427 -
Sed08g1757 495 PRINTS Hemoglobinase (C13) cysteine protease signature 59 83 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed08g1757 495 PRINTS Hemoglobinase (C13) cysteine protease signature 84 113 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed08g1757 495 PRINTS Hemoglobinase (C13) cysteine protease signature 208 224 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed08g1757 495 PRINTS Hemoglobinase (C13) cysteine protease signature 159 178 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed08g1757 495 PRINTS Hemoglobinase (C13) cysteine protease signature 131 146 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1757 K01369 - - csv:101216082 906.746
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3977 Sed-Chr1:68904363 Sed08g1757 Sed-Chr8:32429836 2.40E-120 dispersed
Sed01g3978 Sed-Chr1:68904363 Sed08g1757 Sed-Chr8:32429836 2.50E-120 dispersed
Sed04g2315 Sed-Chr4:36801494 Sed08g1757 Sed-Chr8:32429836 1.40E-116 dispersed
Sed11g0891 Sed-Chr11:21577923 Sed08g1757 Sed-Chr8:32429836 2.80E-254 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g53 . . . . Bpe02g01534 . . . Cmo05g00111 Cmo12g00569 . Cma05g00105 . Car12g00576 Sed08g1757 Cpe07g00549 . Bhi04g00491 Tan02g1654 Cmetu02g1720 . Hepe08g1379 . Lcy13g2174 . . . . . . . Cone4ag1649 Cone7ag1300 . Cone20ag0258 . . . . Blo17g00296 Blo18g00291 Bda01g01323 Bda13g01611 Bpe14g00254 . Bma01g00929 . . . . . Cma12g00628 . Car05g00091 Cpe11g00085 . . . . . . . . . . . . . . . Lsi08g01572 Csa02g01849 Chy03g01635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005098 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41